View source: R/cbaf-xlsxOutput.R
xlsxOutput | R Documentation |
This function generates excel files containing gene validation and all selected statistical methods. It uses outputs of obtainOneStudy()/obtainMultipleStudies() and automatedStatistics() functions.
xlsxOutput(submissionName, transposeResults = FALSE)
submissionName |
a character string containing name of interest. It is used for naming the process. |
transposeResults |
a logical value that enables the function to replace the columns and rows of data. |
Package: | cbaf |
Type: | Package |
Version: | 1.19.5 |
Date: | 2022-07-19 |
License: | Artistic-2.0 |
It generates one excel file for each gene group. This excel file contains output of automatedStatistics() and validation result from output of either obtainOneStudy() or obtainMultipleStudies().
Arman Shahrisa, shahrisa.arman@hotmail.com [maintainer, copyright holder]
Maryam Tahmasebi Birgani, tahmasebi-ma@ajums.ac.ir
genes <- list(K.demethylases = c("KDM1A", "KDM1B", "KDM2A", "KDM2B", "KDM3A", "KDM3B", "JMJD1C", "KDM4A"), K.methyltransferases = c("SUV39H1", "SUV39H2", "EHMT1", "EHMT2", "SETDB1", "SETDB2", "KMT2A", "KMT2A")) obtainOneStudy(genes, "test", "Breast Invasive Carcinoma (TCGA, Cell 2015)", "RNA-Seq", desiredCaseList = c(3,4)) automatedStatistics("test", obtainedDataType = "single study", calculate = c("frequencyPercentage", "frequencyRatio")) xlsxOutput("test")
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