availableData: Check which Data types are available for each cancer study.

In armanshahrisa/cbaf: Automated functions for comparing various omic data from cbioportal.org

Check which Data types are available for each cancer study.

Description

This function checks all the cancer studies that are registered in 'cbioportal.org' to examine whether or not they contain RNA-Seq, microRNA-Seq, microarray(mRNA), microarray(miRNA) and methylation data.

Usage

availableData(excelFileName, oneOfEach = FALSE)

Arguments

excelFileName	a character string that is required to name the output and, if requested, excel file.
oneOfEach	a character string that is used to alter the function's behavior to select unique one cancer of each type that contains data for the requested technique. The default value is "FALSE". Supported techniques include "RNA-Seq", "RNA-SeqRTN", "microRNA-Seq", "Microarray.mRNA", "Microarray.mRNA", and "methylation".

Details

Package:	cbaf
Type:	Package
Version:	1.19.5
Date:	2022-07-19
License:	Artistic-2.0

Value

An excel file that contains all the cancer studies versus available data types

Author(s)

Arman Shahrisa, [e-mail] [maintainer, copyright holder]

Maryam Tahmasebi Birgani, [e-mail]

armanshahrisa/cbaf documentation built on Nov. 5, 2022, 3:21 a.m.