Manhattan: Manhattan

In arnhew99/Jasper: Jasper makes plots

Manhattan

Arguments

pvals	Vector of p values to be plotted
pt_cols	Either a single colour to be used for all points or a vector of colours of the same length as pvals with one colour for each point (default: black)
yaxis.max	Specify the end of the Y axis in displayed units (negative log base 10) (default: 30)
yaxis.ticks.by	(default: 5)
xlab	X axis label
ylab	Y axis label (default: Negative log10 P value)
add.bonferroni	(default: TRUE)
font.bonferroni	(default: 1)
new.plot	Allow this function to handle setting up a plotting area, either using the values given for xlim etc. or detecting them from the data (default: TRUE)
blanks.after	(default: NULL)
cex	Font scaling factor (multiplies the underlying panel "unit" font size) (default: 1)
xaxis.label.line	Margin line on which to draw the X axis label (default: 0.5)
margins	Specify margins for the plot if plot.new = TRUE (default: c(3, 6, 0.1, 2))
pch	Specify point symbol to use; to see a list of possible types look at ?points (default: 1)
pt.lwd	Specify the line width to use when drawing points (default: 1)
draw.base.line	(default: TRUE)

Author(s)

Matt Arnold

arnhew99/Jasper documentation built on Nov. 19, 2022, 2:46 p.m.