Manhattan | R Documentation |
pvals |
Vector of p values to be plotted |
pt_cols |
Either a single colour to be used for all points or a vector of colours of the same length as pvals with one colour for each point (default: black) |
yaxis.max |
Specify the end of the Y axis in displayed units (negative log base 10) (default: 30) |
yaxis.ticks.by |
(default: 5) |
xlab |
X axis label |
ylab |
Y axis label (default: Negative log10 P value) |
add.bonferroni |
(default: TRUE) |
font.bonferroni |
(default: 1) |
new.plot |
Allow this function to handle setting up a plotting area, either using the values given for xlim etc. or detecting them from the data (default: TRUE) |
blanks.after |
(default: NULL) |
cex |
Font scaling factor (multiplies the underlying panel "unit" font size) (default: 1) |
xaxis.label.line |
Margin line on which to draw the X axis label (default: 0.5) |
margins |
Specify margins for the plot if plot.new = TRUE (default: c(3, 6, 0.1, 2)) |
pch |
Specify point symbol to use; to see a list of possible types look at ?points (default: 1) |
pt.lwd |
Specify the line width to use when drawing points (default: 1) |
draw.base.line |
(default: TRUE) |
Matt Arnold
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