runApp: Run Pavian web interface

In aroelo/ncp_pavian: Visualize and analyze metagenomics classification results

Description

Run Pavian web interface

Usage

runApp(
  cache_dir = "cache",
  server_dir = Sys.glob("~"),
  server_access = TRUE,
  load_example_data = FALSE,
  load_server_directory = FALSE,
  maxUploadSize = NULL,
  enableBookmarking = "server",
  flask_host = NULL,
  flask_port = NULL,
  db_type = NULL,
  db_name = NULL,
  db_host = NULL,
  db_port = NULL,
  db_user = NULL,
  db_passwd = NULL,
  ...
)

pavianApp(...)

Arguments

cache_dir	Directory to save temporary files.
server_dir	Directory for sample files.
server_access	Allow users to change server directory
load_example_data	Load example data.
load_server_directory	Load server directory.
maxUploadSize	Maximum upload size for reports and BAM files.
enableBookmarking	Enable bookmarking? Possible values 'disable' or 'server' (default).
...	Additional arguments to runApp, such as host and port.

Functions

• pavianApp: Create pavian app (passes arguments to runApp)

aroelo/ncp_pavian documentation built on May 2, 2021, 4:16 a.m.