Files in artaylor85/paneljudge
Judge the performance of a panel of genetic markers using simulated data
.Rbuildignore
.gitignore
Analysis_multipanel_multicountry/All_Sanger_Amplicon_Haplotype_Frqs.Rdata
Analysis_multipanel_multicountry/Generate_results_multipanel_comparison.R
Analysis_multipanel_multicountry/Process_Sanger_Barcode.R
Analysis_multipanel_multicountry/frequencies_sanger_barcode.RData
Analysis_multipanel_multicountry/markers_sanger_barcode.RData
Analysis_multipanel_multicountry/mles_CIs_GTseq.RData
Analysis_multipanel_multicountry/mles_CIs_GTseq_notCTSA.RData
Analysis_multipanel_multicountry/mles_CIs_onlyCTSA.RData
Analysis_multipanel_multicountry/mles_CIs_sanger_barcode.RData
Analysis_multipanel_multicountry/multipanel_multicountry.Rmd
Analysis_multipanel_multicountry/multipanel_multicountry.aux
Analysis_multipanel_multicountry/multipanel_multicountry.out
Analysis_multipanel_multicountry/multipanel_multicountry.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/example plot of diversities wrt positions-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/marker summary plots GTseq panel-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/marker summary plots sanger barcode-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot CI length all k-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot CI length per k-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot CIs-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot RMSE all ks-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot RMSE lengths per k-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/plot RMSE per panel-1.pdf
Analysis_multipanel_multicountry/multipanel_multicountry_files/figure-latex/position plot-1.pdf
Analysis_multipanel_multicountry/ref.bib
Analysis_multipanel_multicountry/vancouver.csl
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/compute_marker_summaries.R
R/compute_r_and_k_CIs.R
R/data.R
R/estimate_r_and_k.R
R/fs_checks.R
R/paneljudge-package.R
R/simulate_Ys.R
README.md
data/chr_lengths.RData
data/frequencies.RData
data/markers.RData
data_raw/Generate_chr_lengths.R
data_raw/Process_GTseq.R
data_raw/amp_frqs.rds
man/chr_lengths.Rd
man/compute_diversities.Rd
man/compute_eff_cardinalities.Rd
man/compute_r_and_k_CIs.Rd
man/estimate_r_and_k.Rd
man/frequencies.Rd
man/markers.Rd
man/simulate_Ys.Rd
paneljudge.Rproj
src/.gitignore
src/RcppExports.cpp
src/hmmloglikelihood.cpp
testing_scripts/Tests.R
vignettes/.gitignore
vignettes/paneljudge_example.Rmd
vignettes/ref.bib
vignettes/vancouver.csl
