markers: Data on markers of the example GTseq panel.

In artaylor85/paneljudge: Judge the performance of a panel of genetic markers using simulated data

Data on markers of the example GTseq panel.

Description

A data set of marker attributes for markers pertaining to the example GTseq panel.

Usage

markers

Format

A data frame with 126 rows and 8 variables:

Amplicon_name

Name (character) of the microhaplotype marker ("Amplicon" because typed using an amplicon)

Chr

Chromosome (character) of the microhaplotype marker

Start

First base pair (integer) of the microhaplotype marker

Stop

Last base pair (integer) of the microhaplotype marker

length

Length (integer) of the microhaplotype marker in base pairs

pos

Mid-point (numeric) of the microhaplotype marker

chrom

Chromosome (numeric) of the microhaplotype marker

distance

Inter mid-point distance (numeric) between the microhaplotype marker and its subsequent neighbour

Source

see https://github.com/artaylor85/paneljudge/blob/master/data_raw/Process_GTseq.R

artaylor85/paneljudge documentation built on March 6, 2023, 1:50 a.m.