Man pages for artedison/ensRadaptor
Metabolic model creator for ensemble method
| as_data_frame_rowname | modified version of as.data.frame for rownames |
| boxplot_multi_exp | boxplot of multiple species and different experiments |
| boxplot_multi_exp_comb | boxplot of multiple species and different experiments |
| change_block | Editing or showing specific blocks (ens.i01) |
| change_def | editing or showing ens.def files |
| change_para | Editing or showing ensemble input files (ens.i01) for single... |
| change_sh | editing or showing ens.sh files |
| comb_accum | comb accumulated run |
| densi_region | constructed density frunction from a list of interval |
| depend_for | dependences formulation |
| draw_hist | plot distribution histogram for summary |
| draw_sweep | plot var~sweep |
| equa_check | check equalabration |
| exp_model_overlay | overlay experiment measurement with model predicted result in... |
| exp_model_tab | experiment specie concentration fetching(o01) |
| file_str_which | file based str_which |
| foldcreate | folder creating |
| formu_reac | formualte transcription and translation |
| homoge_file | modify output script for consistency |
| iniguess | set initial guess |
| k1_range | k1 range production |
| kine_para_refine | refine kinetic parameters |
| linecount | count number of lines in the file |
| mod_model_tab | model specie concentration fetching(o01) |
| multi_line_map | str_which for multiple lines |
| nameparser | parser for name information |
| numparse | parse the parameter numbers for theta speceis/parameters |
| o02_clean | clean o02 file |
| o02_reader | reader for o02 file |
| o03_reader | reader for o03 file |
| plot_multi_spec_time | plot of time trajectory of multiple species |
| pre_file_prepare | prepare input files |
| prior_reader | read the prior information |
| randloglhs | initial guess generate |
| react_output | formulate the reaction part of i01 (in a default format) |
| react_output_format | formulate the reaction part of i01 based on format files |
| read_reac | read reactions file |
| rela_ind_screen | use relative locaiton between indx and indy to filter indy |
| spec_output | formulate the species part of i01(in a default format) |
| spec_output_format | formulate the species part of i01 based on format files |
| summary_input | summary input files |
| summary_o02 | summary plot for o02 |
| summary_reac | reaction summary |
| tabparse | table data parse |
| template_exp_data | formualte the dataset (i02) |
| template_spec_reac | produce i01 file |
| update_history | record history in the history file |
