Man pages for ashiklom/fortebaseline
Forest Resilience and Threshold Experiment (FoRTE) ED2 baseline runs source code and manuscript
| arrhenius.scaling | Scale temperature dependent trait from measurement... |
| as_pft_list | Convert 'data.frame' to PFT list suitable for 'write_ed2_xml'... |
| beta0 | Beam backscatter |
| bety | Shortcut to open a BETY connection |
| bety_tables | Shortcut access functions for BETY table joins |
| convert.samples.ED | convert parameters from PEcAn database default units to ED... |
| draw_traits | Draw traits from data frame describing prior or posterior |
| ed2in_common | Common ED2IN settings for FoRTE baseline runs |
| ed_default_params | ED2 default parameters |
| ed_input_dir | Directory containing ED2 inputs |
| fst_cohort | Shortcuts for processed output files |
| fvector | Create a variable-index vector or matrix |
| get_ids | Retrieve ID from a BETY table given a name |
| get_pft_ids | Extract BETY PFT, species, or variable IDs given a vector of... |
| gfunction | Relative (G) or absolute (K) projected leaf area in the... |
| integrate_light | Integrate light levels from flux estimates |
| listToXml | Convert List to XML |
| load_local | Read an 'Rdata' file into a list (rather than into the global... |
| ms_tau_diffuse | Transmissivity to diffuse radiation for the multiple-scatter... |
| mu_bar | Average inverse optical depth |
| multi_scatter | Multiple-scatter model |
| pb_along | Create progress bar object with length equal to target object |
| pbn | Create a progress bar with total = 'n' |
| pecan_ma_pft | Run PEcAn trait meta analysis for a specific PFT |
| pfts | PFT information |
| phi1_f | Leaf orientation coefficients |
| qdate | Create datetime object from isolated pieces |
| read_configxml | Read ED2 parameter file ('config.xml') into a 'data.frame' |
| read_e_file | Read monthly (-E-) file |
| read_efile_dir | Read directory full of E files |
| read_i_cohort | Read cohort data from 'I' file |
| read_o_file | Read observed (-O-) file |
| run_ed | Start an ED2 model run using 'processx' |
| run_ed_maybe | Run ED2, but only if there isn't a run there already |
| sensitivity_analysis | One-at-a-time PEcAn sensitivity analysis |
| set_pft | Set PFT from ED integer number |
| single_scatter_albedo | Single-scattering albedo |
| tail_ed_output | View the end of the ED2 output log file |
| tau_direct | Transmissivity to direct radiation |
| tidy_posterior | Convert list of meta-analysis results to a tidy 'data.frame'... |
| top_n_sensitivity_plot | Plot the top N sensitivity values |
| try_numeric | Try to convert a value to numeric. If unsuccessful, return... |
| ts_mubar_star | Average inverse optical depth for diffuse radiation:... |
| ts_tau_diffuse | Transmissivity of diffuse radiation: Two-stream |
| two_stream | R implementation of ED2 two-stream radiation model |
| umbs_soil | UMBS soil date for inputs to ED2 |
| with_prog | Add progress bar to function '.f' |
| write.config.xml.ED2 | Write ED2 config.xml file |
| write_ed2_xml | Write ED2 XML file |
