getGeneEffectsInDepMap: Interactive plot to show the effects of genes on cancer...
In ashishjain1988/KnowYourTarget: Create an HTML Dashboard to know more about effects and drugs targeting a gene using NCI60 and DepMap data
Description
Usage
Arguments
Value
Author(s)
View source: R/getGeneEffect.R
Description
This function creates the interactive plot to show the effects of
genes on cancer proliferation using the DepMap CRISPR-Cas9 data.
different figures and plots explaining the MAF dataset.
Usage
1
2
3
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5
getGeneEffectsInDepMap(
genes = NULL,
depMapVersion = "",
groupBySubtypes = FALSE
)
Arguments
genes
A list of genes (Hugo symbol)
depMapVersion
DepMap data version to be used
groupBySubtypes
Group the cancer cell lines from cancer subtypes, default=FALSE
Value
A list containing plots for individual genes. For each gene, we have three plots showing
the DepMap CRISPR-Cas9 data in the form of histogram, boxplot, and combined plot.
Author(s)
Ashish Jain
ashishjain1988/KnowYourTarget documentation built on Dec. 19, 2021, 5:35 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
View source: R/getGeneEffect.R
Description
This function creates the interactive plot to show the effects of genes on cancer proliferation using the DepMap CRISPR-Cas9 data. different figures and plots explaining the MAF dataset.
Usage
1 2 3 4 5 | getGeneEffectsInDepMap(
genes = NULL,
depMapVersion = "",
groupBySubtypes = FALSE
)
|
Arguments
genes |
A list of genes (Hugo symbol) |
depMapVersion |
DepMap data version to be used |
groupBySubtypes |
Group the cancer cell lines from cancer subtypes, default=FALSE |
Value
A list containing plots for individual genes. For each gene, we have three plots showing the DepMap CRISPR-Cas9 data in the form of histogram, boxplot, and combined plot.
Author(s)
Ashish Jain
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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