Man pages for askv4694/ewasvisual
Epigenominal disease studies visualization
| addTrait | Add a new study with a trait name |
| appendMatrixSize | Append matrix rows |
| cleanAndMergeData | Clean data and merge other matrices |
| convertIDS | Convert studyNames to ids for connections |
| deleteCols | Leave only certain columns |
| dfForHistogram | A dataframe for stacked histogram |
| filterBy | Filter data according to given array |
| getEstimatedVals | Estimated values of odd ands pval |
| getNewRow | Get new row |
| getSimilarCols | Get similar studies |
| getSimilarTraits | Generate infromation from connection data |
| getVisNetwork | Get visNetwork plot |
| groupColor | Assign color by group |
| hideArrows | Leave only one arrow between same nodes |
| instructions | Print basic instructions how to |
| makeArray | Make an array of TRUE/FALSE for given positions |
| makeConnections | Make a dataframe of linked studies |
| makeEdges | Make edges for visNetwork |
| makeNodes | Make nodes for visNetwork |
| maxMatrix | Append all missing cg positions from annotation |
| mergeData | Merge several data matrices |
| processData | Process data into a dataframe for connections |
| rawMockData | Get Raw Mock Data |
| removeDuplicates | Remove duplicate Study.id |
| rowAndCol | True and False matrix |
| setTraitColors | Set trait color |
| stackedHistogram | A stacked histogram |
| traitTable | Trait table |
