processData: Process data into a dataframe for connections

In askv4694/ewasvisual: Epigenominal disease studies visualization

Description

Process data into a dataframe for connections

Usage

processData(
  data,
  positions = 0,
  studies = 0,
  studByTraits = 0,
  maxPositions = FALSE,
  minSampleSize = 100
)

Arguments

data	A dataframe of general data
positions	An array of cg positions in the new study that wants to be checked, 0 by default - all positions included
studies	An array of study names that wants to be checked, 0 by default - all study names included
studByTraits	A list of trait names to be filtered by. 0 by default
maxPositions	Set to FALSE by Default. If set to TRUE, 900k positions will be used in general
minSampleSize	Minimal sample size to be used. Set to 100 by default

Value

A matrix of positions x studies with TRUE/FALSE values. If a cg position is found in specific study - valuse set to TRUE

Examples

data1 <- processData(data, col)
data1 <- processData(data, col, positions, studies)
data1 <- processData(data, col, positions, minSampleSize = 500)

askv4694/ewasvisual documentation built on Dec. 19, 2021, 5:36 a.m.