Files in asmagen/robustSingleCell
Robust Clustering of Single Cell RNA-Seq Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/PCA.R
R/RcppExports.R
R/Rphenograph.R
R/cluster_analysis.R
R/clustering.R
R/differential_gene_expression.R
R/initialize.R
R/plot.R
R/preprocess.R
R/read_data.R
R/simiarlity.R
R/sysdata.rda
R/tSNE.R
R/utils.R
README.Rmd
README.md
data-raw/export_regev_cell_cycle.R
data-raw/extract_pages.sh
data-raw/subset_sample.R
inst/extdata/LCMV1_small.txt
inst/extdata/LCMV2_small.txt
man/PCA.Rd
man/Rphenograph.Rd
man/add.confounder.variables.Rd
man/assess.cluster.similarity.Rd
man/cell.cycle.score.Rd
man/cluster.analysis.Rd
man/controlled.mean.score.Rd
man/download_LCMV.Rd
man/filter_cluster_data.Rd
man/find_neighbors.Rd
man/get.cluster.names.Rd
man/get.robust.cluster.similarity.Rd
man/get.robust.markers.Rd
man/get.variable.genes.Rd
man/initialize.project.Rd
man/mitochondrial.score.Rd
man/plot_PCA.Rd
man/plot_contour_overlay_tSNE.Rd
man/plot_pair_scatter.Rd
man/plot_simple_heatmap.Rd
man/read.data.Rd
man/read.preclustered.datasets.Rd
man/read_10x_data.Rd
man/ribosomal.score.Rd
man/run_tSNE.Rd
man/setup_LCMV_example.Rd
man/setup_pooled_env.Rd
man/summarize.Rd
man/visualize.cluster.cors.heatmaps.Rd
man/visualize.cluster.similarity.stats.Rd
robustSingleCell.Rproj
src/RcppExports.cpp
src/jaccard_coeff.cpp
tests/testthat.R
tests/testthat/test-clustering.R
tests/testthat/test-get_dist.R
tests/testthat/test-preprocessing.R
vignettes/.gitignore
vignettes/figs/CD4.contour.tSNE.png
vignettes/figs/CD8.contour.tSNE.png
vignettes/figs/Clustering.modularity.png
vignettes/figs/LCMV1_LCMV2_similarity.png
vignettes/figs/PC1_heatmap.png
vignettes/figs/PC2_heatmap.png
vignettes/figs/PCA.png
vignettes/figs/cluster.size.png
vignettes/figs/contour.plot.png
vignettes/figs/cor_FC.png
vignettes/figs/diff.genes.png
vignettes/figs/post_stats.png
vignettes/figs/pre_stats.png
vignettes/figs/robust.diff.detection.png
vignettes/figs/rotation.png
vignettes/figs/tsne.png
vignettes/figs/violin.png
vignettes/lcmv.Rmd
