mitochondrial.score: Compute Mitochondrial Score

In asmagen/robustSingleCell: Robust Clustering of Single Cell RNA-Seq Data

Compute Mitochondrial Score

Description

Compute the activation level of mitochondrial genes.

Usage

mitochondrial.score(environment, control = F, knn = 10)

Arguments

environment	environment object
control	whether to subtract the score defined by technically similar genes
knn	number of nearest neighbor

Value

a vector of mitochondrial genes activation score

Examples

LCMV1 <- setup_LCMV_example()
mitochondrial.score <- mitochondrial.score(LCMV1)

asmagen/robustSingleCell documentation built on July 30, 2023, 6:48 a.m.