QDNAseq.hg38-package: Package QDNAseq.hg38

In asntech/QDNAseq.hg38: QDNAseq bin annotation for hg38

Package QDNAseq.hg38

Description

This package provides QDNAseq binannotations for the mouse genome build hg38 for bin sizes 1, 5, 10, 15, 30, 50, 100, 500 and 1000 kbp (kilobasepair).

The datasets are named as follows:

hg38.1kbp.SR50
hg38.5kbp.SR50
hg38.10kbp.SR50
hg38.15kbp.SR50
hg38.30kbp.SR50
hg38.50kbp.SR50
hg38.100kbp.SR50
hg38.500kbp.SR50
hg38.1000kbp.SR50

License

This package is licensed under GPL.

Author(s)

Daoud Sie

Examples

data("hg38.50kbp.SR50")
assign("bins", get("hg38.50kbp.SR50"))
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

# or

bins <- getBinAnnotations(binSize=50, genome="hg38")
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

asntech/QDNAseq.hg38 documentation built on Aug. 11, 2022, 9:07 p.m.