find_overlaps: Find overlapping indices of two gtf/gff/bed/bam objects

Description Usage Arguments Value

Description

For internal use only. Function for finding overlaps between two objects of class gtf/gff/bed/bam using GenomicRanges::findOverlaps.

Usage

1
find_overlaps(x, y, ignore_redundant = FALSE, ignore_strand = FALSE, ...)

Arguments

x, y

An object of class gtf, gff, bed or bam.

ignore_redundant

Should redundant overlaps be ignored?

ignore_strand

Logical argument to pass to GRanges function. Indicates whether strand should be ignored when constructing GRanges object or not. Default is FALSE.

...

Additional arguments passed to GenomicRanges::findOverlaps.

Value

A data.table containing overlapping indices.


asrinivasan-oa/gcount documentation built on May 12, 2019, 5:37 a.m.