Package with a bunch of useful R functions

Global functions | |
---|---|

DESeqDataSetFromExpressionSet | Source code |

aggregateColumns | Source code |

allOneReactionDeletions | Source code |

appendToNames | Source code |

changeObjFuncRel | Source code |

collapseBy | Source code |

combineDE | Source code |

compareFluxes | Source code |

diffExprM | Source code |

exprsFromSpotfire | Source code |

exprsFromSpotfireDir | Source code |

fluxVia | Source code |

getConditionLogFCs | Source code |

getFluxGraph | Source code |

getIntersectionSets | Source code |

loadOrInstall | Source code |

makeAnnotated | Source code |

makeContrasts2 | Man page Source code |

makeExpressionSetFromFile | Source code |

matrixAsColumnList | Source code |

messagef | Source code |

normalize.rows | Source code |

normalizeExpressions | Man page Source code |

normalizeGeneDE | Source code |

normalizeMetDE | Source code |

oneReactionDeletion | Source code |

pairwiseCompare | Source code |

pcaPlot | Man page Source code |

prependToNames | Source code |

read.gct | Man page Source code |

read.gtf | Man page Source code |

read.table.smart | Source code |

read.tsv | Source code |

rename.smart | Source code |

replaceNA | Source code |

setSimilarity | Source code |

warningf | Source code |

write.gct | Source code |

write.tsv | Source code |

zScore | Source code |

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