In astamm/rtists: R for Tissue Integrity Superimposed on Tractography Streamlines

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

rtists

The goal of rtists is to provide visualization tools for tissue integrity superimposed on tractography streamlines.

Installation

You can install the development version of rtists from GitHub with:

# install.packages("devtools")
devtools::install_github("astamm/rtists")

Example

The following code generates a basic 3D visualisation of the left uncinate fasciculus:

library(rtists)
library(future)
plan(multisession)
out <- autoplotly::autoplotly(uf_left)
plan(sequential)

html_path <- knitr::fig_path("html")
png_path <- knitr::fig_path("png")
htmlwidgets::saveWidget(
  out, 
  file = html_path, 
  selfcontained = FALSE, 
  libdir = "lib"
)
webshot2::webshot(url = html_path, file = png_path)

astamm/rtists documentation built on April 14, 2022, 9:44 a.m.