data_transformer: Apply SCtransform to a list of Seurat objects

In atakanekiz/SCseqtools: Deal With Your Single Cell RNAseq Data With Ease

Apply SCtransform to a list of Seurat objects

Description

This function is a wrapper to apply SCtransform to a list of Seurat objects. See Seurat vignette for more details.

Usage

data_transformer(
  object_list,
  verbose = T,
  min_nFeature = 750,
  max_nFeature = 5000,
  max_percent.mt = 7.5
)

Arguments

object_list	A list of Seurat objects (easily prepared by data_importer function in this package)
verbose	Whether to print messages and progress bar for 'Seurat::SCTransform()'
min_nFeature	Minimum feature number for filtering out cells
max_nFeature	Maximum feature number for filtering out cells
max_percent.mt	Maximum mitochondrial gene percentage for filtering out cells

Value

SCtransformed object list

atakanekiz/SCseqtools documentation built on April 18, 2023, 12:55 a.m.