librarySize: Calculate total read counts for each sample.

In athchen/PhIPData: Container for PhIP-Seq Experiments

Description

This function is a wrapper function for colSums on the counts assay.

Usage

librarySize(object, ..., withDimnames = TRUE)

Arguments

object	PhIPData object
...	arguments passed to colSums
withDimnames	logical; if true, the vector names are the sample names; otherwise the vector is unnamed.

Value

a (named) numeric vector. The length of the vector is equal to the number of samples.

Examples

example("PhIPData")
librarySize(phip_obj)

## Return an unnamed vector
librarySize(phip_obj, withDimnames = FALSE)

athchen/PhIPData documentation built on Feb. 10, 2022, 1:34 a.m.