Man pages for atredennick/IPMdoit
Contains functions to implement Integral Projection Models for multispecies plant communities.
| crowd_no_overlap | Calculate crowding with genet overlap not allowed |
| crowd_no_overlap_ss | Calculate crowding with genet overlap not allowed |
| crowd_overlap | Calculate crowding with genet overlap allowed |
| crowd_overlap_ss | Calculate crowding with genet overlap allowed |
| expand_W_matrix | Expand crowding matrix |
| GenerateMultivariatePoisson | Generate poisson vector |
| get_cov | Get nt covariance |
| get_pairs | Get pairs |
| make_inits_ipm | Function to create iteration matrix size and initial vectors... |
| make_inits_ipm_ss | Function to create iteration matrix size and initial vectors... |
| make_K_matrix | Make iteration matrix based only on mean crowding |
| make_K_matrix_clim | Make iteration matrix based on mean crowding and climate |
| make_K_matrix_ss | Make iteration matrix based only on mean crowding: single... |
| make_K_matrix_ss_clim | Make iteration matrix based on mean crowding and climate:... |
| make_K_values | Make iteration matrix |
| make_K_values_clim | Make iteration values |
| sum_cover | Function to sum total cover of each species |
| sum_N | Function to sum total density of each species |
| varN | Function to calculate size variance of each species |
| wriG_ss | Function to calculate size-dependent crowding for growth,... |
| wrijG | Function to calculate size-dependent crowding for growth,... |
| wrijS | Function to calculate size-dependent crowding for survival,... |
| wriS_ss | Function to calculate size-dependent crowding for survival,... |
