In atredennick/patches: Calculates metrics for analysis of alpha, beta, and gamma variability

This is a quick example for using the function patches_var() in the patches package.

# Load relevant packages
# install.packages(c("dplyr", "plyr", "reshape2", "synchrony", "devtools"))
require(dplyr)
require(plyr)
require(reshape2)
require(synchrony)
require(devtools)

# Install package from GitHub
devtools::install_github("atredennick/patches")
require(patches)


# Read in data
setwd("/Users/atredenn/Dropbox/Patches/")
species_data_kbs <- read.csv("./Data sets/AllSpData_02282015.csv")%>%
              filter(site_code=="KBS") %>%
              filter(treatment=="T0F0")

# Run data through function with default settings
all_metrics <- patches_var(D=species_data_kbs)

# Look at the structure
str(all_metrics)

# Look at patch synchrony, for example
print(all_metrics$patch_synchrony)

atredennick/patches documentation built on May 10, 2019, 2:11 p.m.