fill_transitions: Combine prior and data for transition matrix
In atyre2/raretrans: Bayesian Priors for Matrix Population Models

fill_transition returns the expected value of the transition matrix combining observed transitions for one time step and a prior

1	fill_transitions(TF, N, P = NULL, priorweight = -1, returnType = "T")

`TF`	A list of two matrices, T and F, as ouput by `projection.matrix`.
`N`	A vector of observed transitions.
`P`	A matrix of the priors for each column. Defaults to uniform.
`priorweight`	total weight for each column of prior as a percentage of sample size or 1 if negative
`returnType`	A character vector describing the desired return value. Defaults to "T" the transition matrix.

The return value depends on parameter returnType.

A - the summed matrix "filled in" using a dirichlet prior
T - just the filled in transition matrix
TN - the augmented matrix of fates – use in calculating the CI or for simulation

atyre2/raretrans documentation built on Sept. 28, 2020, 8:55 p.m.