plot_edgeR: Dot plots based on edgeR results for microbiome data
In audreyrenson/nychanes2microbiome:

Description Usage Arguments

View source: R/edgeR_plots.R

Plots results of get_edgeR_results_all_levels() using the ggplot2 engine.

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plot_edgeR(formla, ttle = NULL, varname = NULL, pseq = NYC_HANES,
  coef = 2, printIfEmpty = FALSE, invisbl = FALSE, color = "FDR",
  sortby = NULL, ...)

`formla`	formula. specifies the design matrix used by `edgeR::glmFit`.
`ttle`	character. Title of plot.
`varname`	character. Label for independent variable, for plotting.
`pseq`	object of class `phyloseq`
`coef`	integer. Specifies which linear model coefficient to test (default 2).
`printIfEmpty`	logical. If no results pass alpha, whether or not to plot an empty plot.
`invisbl`	logical. Whether or not to forgoe plotting. Either way, invisibly returns the `topTags` object returned by `get_edgeR_results`.
`color`	character. Variable to color by, from either the `tax_table` or the `topTags$table`.
`sortby`	character. Variable to sort the plot by, from either the `tax_table` or the `topTags$table`.
`...`	further arguments passed to `get_edgeR_results`.