augusto-garcia/onemap: Construction of Genetic Maps in Experimental Crosses
Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.
Getting started
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Package details |
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| Author | Gabriel Margarido [aut], Marcelo Mollinari [aut], Cristiane Taniguti [ctb, cre], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Karl Broman [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Bastian Schiffthaler [ctb, cph] (HMM parallelization), Augusto Garcia [aut, ctb] |
| Maintainer | Cristiane Taniguti <chtaniguti@tamu.edu> |
| License | GPL-3 |
| Version | 3.0.0 |
| URL | https://github.com/augusto-garcia/onemap |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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