pick_batch_sizes: Picking optimal batch size values

In augusto-garcia/onemap: Construction of Genetic Maps in Experimental Crosses

Picking optimal batch size values

Description

Suggest an optimal batch size value for use in map_overlapping_batches

Usage

pick_batch_sizes(input.seq, size = 50, overlap = 15, around = 5)

Arguments

input.seq	an object of class sequence.
size	The center size around which an optimum is to be searched
overlap	The desired overlap between batches
around	The range around the center which is maximally allowed to be searched.

Value

An integer value for the size which most evenly divides batches. In case of ties, bigger batch sizes are preferred.

Author(s)

Bastian Schiffthaler, [e-mail]

See Also

map_overlapping_batches

Examples

  LG <- structure(list(seq.num = seq(1,800)), class = "sequence")
  batchsize <- pick_batch_sizes(LG, 50, 19)

augusto-garcia/onemap documentation built on Nov. 30, 2022, 9:13 p.m.