Files in aukkola/FLUXNET2015_processing

Quality Control and Data Conversion for 'FLUXNET' Data for Land Surface Modelling

.Rbuildignore

.gitattributes

.github/workflows/R-CMD-check.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

FluxnetLSM.Rproj

NAMESPACE

R/Aggregation.R R/Checks.R R/Constants.R R/Conversions.R R/ConvertSpreadsheetToNcdf.R R/Gapfilling.R R/Handlers_NetCDF.R R/Handlers_csv.R R/Helpers.R R/Model_initialisations.R R/Plotting.R R/Site_metadata.R R/Synthesize_and_gapfill_functions.R R/Timing_general.R R/Utility_functions.R README.md analysis/site_meta_data_tests.R analysis/test_run.R

docs/404.html

docs/TODO.html

docs/articles/FLUXNET2015_processing.html

docs/articles/index.html

docs/articles/lathuile_processing.html

docs/articles/meta_data.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/AnnualCycle.html

docs/reference/ChangeUnits.html

docs/reference/CheckCSVTiming.html

docs/reference/CheckDataGaps.html

docs/reference/CheckDataRanges.html

docs/reference/Create2Uchar.html

docs/reference/CreateFluxNetcdfFile.html

docs/reference/CreateMetNetcdfFile.html

docs/reference/CreateTimeunits.html

docs/reference/DayNight.html

docs/reference/DiurnalCycle.html

docs/reference/FillQCvarMissing.html

docs/reference/FindExcludeEval.html

docs/reference/FindFluxInd.html

docs/reference/FindTimeVarName.html

docs/reference/GapfillFlux.html

docs/reference/GapfillMet_statistical.html

docs/reference/GapfillMet_with_ERA.html

docs/reference/GetNumberTimesteps.html

docs/reference/GetTimeUnits.html

docs/reference/GetTimestepSize.html

docs/reference/GetTimingNcfile.html

docs/reference/InitialChecks.html

docs/reference/IsWholeYrs.html

docs/reference/ReadCSVFluxData.html

docs/reference/Rel2SpecHumidity.html

docs/reference/SynthesizeLWdown.html

docs/reference/SynthesizePSurf.html

docs/reference/Timeseries.html

docs/reference/VPD2RelHum.html

docs/reference/Yeardays.html

docs/reference/add_processing_info.html

docs/reference/add_processing_metadata.html

docs/reference/aggregate_tsteps.html

docs/reference/append_and_warn.html

docs/reference/append_qc.html

docs/reference/calc_avPrecip.html

docs/reference/calc_esat.html

docs/reference/celsius_to_kelvin.html

docs/reference/check_flx2015_version.html

docs/reference/check_missing.html

docs/reference/convertToHoursMins.html

docs/reference/convert_LaThuile.html

docs/reference/convert_LaThuile_time.html

docs/reference/convert_OzFlux.html

docs/reference/convert_fluxnet_to_netcdf.html

docs/reference/copyfill_data.html

docs/reference/create_dummy_year.html

docs/reference/create_outdir.html

docs/reference/create_qc_var.html

docs/reference/define_model_params.html

docs/reference/doydate.html

docs/reference/duplicate_columns.html

docs/reference/findColIndices.html

docs/reference/findStartTime.html

docs/reference/findTimeInfo.html

docs/reference/find_ind_and_qc.html

docs/reference/gapfill_LWdown_Pair.html

docs/reference/gapfill_with_ERA.html

docs/reference/getMonthDays.html

docs/reference/get_default_conversion_options.html

docs/reference/get_fluxdata_org_site_codes.html

docs/reference/get_fluxdata_org_site_metadata.html

docs/reference/get_fluxnet_erai_files.html

docs/reference/get_fluxnet_erai_template.html

docs/reference/get_fluxnet_file_template.html

docs/reference/get_fluxnet_files.html

docs/reference/get_fluxnet_version_no.html

docs/reference/get_git_version.html

docs/reference/get_lathuile_datapolicy.html

docs/reference/get_ornl_site_codes.html

docs/reference/get_ornl_site_metadata.html

docs/reference/get_ornl_site_url_list.html

docs/reference/get_path_site_code.html

docs/reference/get_qc_flags.html

docs/reference/get_site_code.html

docs/reference/get_site_fluxdata_org_url.html

docs/reference/get_site_metadata.html

docs/reference/get_site_metadata_from_CSV.html

docs/reference/get_site_metadata_web.html

docs/reference/get_site_ornl_url.html

docs/reference/get_varnames.html

docs/reference/index.html

docs/reference/initialise_model.html

docs/reference/initialise_sitelog.html

docs/reference/is.leap.html

docs/reference/linfill_data.html

docs/reference/log_error.html

docs/reference/log_warning.html

docs/reference/metadata_list_to_dataframe.html

docs/reference/no_error.html

docs/reference/plot_nc.html

docs/reference/preprocess_OzFlux.html

docs/reference/qc_frac.html

docs/reference/read_era.html

docs/reference/regfill_flux.html

docs/reference/regpredict.html

docs/reference/regtrain.html

docs/reference/remove_duplicates.html

docs/reference/retrieve_atts.html

docs/reference/retrieve_ranges.html

docs/reference/retrieve_units.html

docs/reference/retrieve_varinfo.html

docs/reference/save_metadata_list_to_csv.html

docs/reference/save_metadata_to_csv.html

docs/reference/site_metadata_template.html

docs/reference/stop_and_log.html

docs/reference/update_csv_from_web.html

docs/reference/update_metadata.html

docs/reference/update_qc.html

docs/reference/warn_and_log.html

docs/reference/warn_missing_metadata.html

docs/reference/write_log.html

docs/sitemap.xml

inst/extdata/LaThuile_site_policy.csv

inst/extdata/Output_variables_FLUXNET2015_FULLSET.csv

inst/extdata/Output_variables_FLUXNET2015_SUBSET.csv

inst/extdata/Output_variables_LaThuile.csv

inst/extdata/Output_variables_OzFlux.csv

inst/extdata/Site_metadata.csv

man/AnnualCycle.Rd man/ChangeUnits.Rd man/CheckCSVTiming.Rd man/CheckDataGaps.Rd man/CheckDataRanges.Rd man/Create2Uchar.Rd man/CreateFluxNetcdfFile.Rd man/CreateMetNetcdfFile.Rd man/CreateTimeunits.Rd man/DayNight.Rd man/DiurnalCycle.Rd man/FillQCvarMissing.Rd man/FindExcludeEval.Rd man/FindFluxInd.Rd man/FindTimeVarName.Rd man/GapfillFlux.Rd man/GapfillMet_statistical.Rd man/GapfillMet_with_ERA.Rd man/GetNumberTimesteps.Rd man/GetTimeUnits.Rd man/GetTimestepSize.Rd man/GetTimingNcfile.Rd man/InitialChecks.Rd man/IsWholeYrs.Rd man/ReadCSVFluxData.Rd man/Rel2SpecHumidity.Rd man/SynthesizeLWdown.Rd man/SynthesizePSurf.Rd man/Timeseries.Rd man/VPD2RelHum.Rd man/Yeardays.Rd man/add_processing_info.Rd man/add_processing_metadata.Rd man/aggregate_tsteps.Rd man/append_and_warn.Rd man/append_qc.Rd man/calc_avPrecip.Rd man/calc_esat.Rd man/celsius_to_kelvin.Rd man/check_flx2015_version.Rd man/check_missing.Rd man/convertToHoursMins.Rd man/convert_LaThuile.Rd man/convert_LaThuile_time.Rd man/convert_OzFlux.Rd man/convert_fluxnet_to_netcdf.Rd man/copyfill_data.Rd man/create_dummy_year.Rd man/create_outdir.Rd man/create_qc_var.Rd man/define_model_params.Rd man/doydate.Rd man/duplicate_columns.Rd man/findColIndices.Rd man/findStartTime.Rd man/findTimeInfo.Rd man/find_ind_and_qc.Rd man/gapfill_LWdown_Pair.Rd man/gapfill_with_ERA.Rd man/getMonthDays.Rd man/get_default_conversion_options.Rd man/get_fluxdata_org_site_codes.Rd man/get_fluxdata_org_site_metadata.Rd man/get_fluxnet_erai_files.Rd man/get_fluxnet_erai_template.Rd man/get_fluxnet_file_template.Rd man/get_fluxnet_files.Rd man/get_fluxnet_version_no.Rd man/get_git_version.Rd man/get_lathuile_datapolicy.Rd man/get_ornl_site_codes.Rd man/get_ornl_site_metadata.Rd man/get_ornl_site_url_list.Rd man/get_path_site_code.Rd man/get_qc_flags.Rd man/get_site_code.Rd man/get_site_fluxdata_org_url.Rd man/get_site_metadata.Rd man/get_site_metadata_from_CSV.Rd man/get_site_metadata_web.Rd man/get_site_ornl_url.Rd man/get_varnames.Rd man/initialise_model.Rd man/initialise_sitelog.Rd man/is.leap.Rd man/linfill_data.Rd man/log_error.Rd man/log_warning.Rd man/metadata_list_to_dataframe.Rd man/no_error.Rd man/plot_nc.Rd man/preprocess_OzFlux.Rd man/qc_frac.Rd man/read_era.Rd man/regfill_flux.Rd man/regpredict.Rd man/regtrain.Rd man/remove_duplicates.Rd man/retrieve_atts.Rd man/retrieve_ranges.Rd man/retrieve_units.Rd man/retrieve_varinfo.Rd man/save_metadata_list_to_csv.Rd man/save_metadata_to_csv.Rd man/site_metadata_template.Rd man/stop_and_log.Rd man/update_csv_from_web.Rd man/update_metadata.Rd man/update_qc.Rd man/warn_and_log.Rd man/warn_missing_metadata.Rd man/write_log.Rd

test.rds

vignettes/FLUXNET2015_processing.Rmd vignettes/lathuile_processing.Rmd vignettes/meta_data.Rmd

aukkola/FLUXNET2015_processing documentation built on July 4, 2023, 12:02 p.m.