sfs: Site Frequency Spectrum
In aumath-advancedr2019/ticphasetype: Phase-type distributions for bioinformatics
Description
Usage
Arguments
Details
Examples
Description
This function returns a list of expected counts of itons up to n-1, or a plot if specified.
It builds the site frequency spectrum using Kingman's coalescent. It works for different
values of 'theta' (population mutation parameter).
Usage
1
Arguments
n
sample size
theta
population mutation parameter
plot
logical
Details
By default, a list of expected values for each i-ton and its variance is returned.
If plot=TRUE, then a plot is returned.
Examples
1
sfs(n = 5, theta = 3)
aumath-advancedr2019/ticphasetype documentation built on Jan. 29, 2020, 12:24 p.m.
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Description Usage Arguments Details Examples
Description
This function returns a list of expected counts of itons up to n-1, or a plot if specified. It builds the site frequency spectrum using Kingman's coalescent. It works for different values of 'theta' (population mutation parameter).
Usage
1 |
Arguments
n |
sample size |
theta |
population mutation parameter |
plot |
logical |
Details
By default, a list of expected values for each i-ton and its variance is returned.
If plot=TRUE, then a plot is returned.
Examples
1 | sfs(n = 5, theta = 3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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