Files in aursiber/kissDE
Retrieves Condition-Specific Variants in RNA-Seq Data
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/diffExpressedVariants.R
R/exploreResults.R
R/kissDE.R
R/kissplice2counts.R
R/qualityControl.R
R/utils.R
R/writeOutputKissDE.R
README.md
inst/NEWS.txt
inst/extdata/head_output_kissplice_SNV_fasta.txt
inst/extdata/head_output_kissplice_alt_splicing_fasta.txt
inst/extdata/output_k2rg_alt_splicing.txt
inst/extdata/output_kissplice_SNV.fa
inst/extdata/output_kissplice_alt_splicing.fa
inst/extdata/table_counts_SNV.txt
inst/extdata/table_counts_alt_splicing.txt
man/diffExpressedVariants.Rd
man/exploreResults.Rd
man/kissDE-package.Rd
man/kissDE.Rd
man/kissplice2counts.Rd
man/qualityControl.Rd
man/writeOutputKissDE.Rd
tests/testthat.R
tests/testthat/test_diffExpressedVariants_K2RG.R
tests/testthat/test_diffExpressedVariants_KS.R
tests/testthat/test_diffExpressedVariants_counts.R
tests/testthat/test_kissplice2counts.R
tests/testthat/test_qualityControl.R
tests/testthat/test_writeOutputKissDE.R
vignettes/Workflow_KissDE.png
vignettes/Workflow_diffExpressedVariants.png
vignettes/bibliography.bib
vignettes/experimental_design_SNP.png
vignettes/hist_pvalue_uncorrected.png
vignettes/kissDE.rnw
vignettes/reads_type.png
