exploreResults: Print kissDE results in an interactive Shiny application

In aursiber/kissDE: Retrieves Condition-Specific Variants in RNA-Seq Data

Print kissDE results in an interactive Shiny application

Description

This function will read the rds file created by writeOutputKissDE and creat an interactive Shiny application allowing users to explore and plot the results of kissDE.

Usage

exploreResults(rdsFile)

Arguments

rdsFile

a string indicating the path to the rds file outputed by writeOutputKissDE.

Value

None.

Examples

kissplice2refgenome_file <- system.file("extdata", 
    "output_k2rg_alt_splicing.txt", package="kissDE")
mySplicingconditions <- c("C1", "C1", "C2", "C2")
counts <- kissplice2counts(fileName=kissplice2refgenome_file, counts=2,
    pairedEnd=TRUE, k2rg=TRUE)
# res <- diffExpressedVariants(countsData=counts, 
#   conditions=mySplicingconditions)
# writeOutputKissDE(res, output="results.tsv")
# exploreResults("results.tsv.rds")

aursiber/kissDE documentation built on Jan. 28, 2024, 10:01 a.m.