phylo.tree: Ultrametric tree for phylogenetic specificity analyses

In austenapigo/lotus: Host Specificity

Description

Phylogenetic tree used to calculate phylogenetic specificity was pruned from a backbone phylogeny representing all extant vascular plant families in North America with the ‘phylo.maker’ function in the V.PhyloMaker package (Jin and Qian 2019). This ultrametric tree includes 26 plant samples from 13 plant species. Plant conspecific phylogenetic distances were manually changed to zero.

Usage

data(phylo.tree)

Format

A phylogenetic tree 26 tips in newick format.

Source

Jin Y, Qian H. 2019. V.PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography. 42:1353–1359

References

Small, E. 1976. Insect pollinators of the Mer Bleue peat bog of Ottawa. Canadian Field Naturalist 90:22-28

Examples

data(phylo.tree)

austenapigo/lotus documentation built on Aug. 8, 2021, 10:54 a.m.