README.md

In avallecam/epihelper: Miscelanea of Custom Funtions From Epidemiology

epihelper

The goal of epihelper is to provide a miscelanea of useful custom functions and related reproducible examples

Installation

And the development version from GitHub with:

if(!require("remotes")) install.packages("remotes")
remotes::install_github("avallecam/epihelper")

Example

This is a basic example which shows you how to solve a common problem:

library(epihelper)
## basic example code

initial helpers

• adorn_ame: adorn a tabyl with totals on margins, percentages and N on values in only one function!

• print_inf: make a quick(er) print(n=Inf)

• read_lastfile: read the last file in a folder (ideal for workflows with daily inputs and updates)

example("adorn_ame")
example("print_inf")

spatial data management

• read_gpx: read GPX extension formats

• st_coordinates_tidy: a tidy alternative to sf::st_coordinates. it retrieve coordinates within the original sf/data.frame object.

• sf_as_ppp: integrates point geometry dataset and a boundary to create a ppp for spatstat analysis. clink here for more information.

• tibble_as_raster: transform a x,y,z tibble to a raster.

example("st_coordinates_tidy")

movement data management

• sum_range_h: custom function to calculate amount of hours between to reported times

• get_distance_m: generates a distance output between two set of points within a tibble and flexible with dplyr::group_by and purrr::pmap

example("get_distance_m")

Main functionalities

Check the reference page for examples.

Code of Conduct

Please note that the epihelper project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

avallecam/epihelper documentation built on March 1, 2024, 9:18 a.m.