In averissimo/r-analysis-covid19: COVID-19 Data Analysis

Exploratory analysis of worldwide COVID-19 cases/deaths.

The full analysis can be found in one of the links below and is updated as the data is updated.

World
Germany (by state)
Italy (by region)
Spain (by region)

Age group analysis

Germany (by state and district)

Source code and tecnhology

Source code is available at averissimo/r-analysis-covid19. All the data and analysis was processed in R programming language.

Data is retrieved from official sources and they are usually updated once or twice every 24h. The report itself is updated every 15minutes, even if there are no changes in the data.

Data

World data is retrieved from EU CDC and is used as the main data source. When there is a delay on the release, we alternatively use John Hopkin's.

Currently, the only exception is for Portugal's data, which is updated around noon (local time) and we extract that information directly from the daily situation PDF report and store the updated dataset in a data package averissimo/covid19.pt.data.

Notes

Data is mainly from EU CDC with some updates from Italy, Portugal and Germany's institutes responsible with this pandemic.

We also use Eurostat and World Bank for relevant statistics and populations.

Mapping for Italy codici_regione taken from istat (note: two regions are mapped to same NUTS 2, we chose one -- see download.it.data)

Badge showing problems with report generation:

rmarkdown::render("/home/averissimo/work/covid19/r-analysis/vignettes/_README.Rmd", output_file = 'README.md')
file.rename('README.md', '../README.md')
unlink('README.html')