Man pages for avucoh/DIVE
Data Integration and Visual Exploration
| asExprsMatrix | Convert data table with ID column to matrix with ID as row... |
| asLimmaInput | Format data for limma |
| asNegLogAdjP | Convert p-values to negative log values |
| cdataMake | Create master data table from a collection of datasets |
| checkCohortData | Check cohort data |
| checkDataUpload | General check function for user-uploaded data |
| checkForID | Check and make character ID column |
| checkGEOmatrixfile | Check the GEO series matrix file |
| checkGEOmetatype | Check GEO metadata for supported dataset type |
| checkGEOplatform | Check the GEO platform |
| checkGEOwrapper | Check a GEO dataset for compatibility |
| cohistPlot | A custom comparison histodot plot |
| colAgg | Coalesce-like function for combining rows |
| colorscale_heatmap_custom | Create custom colorscale for 'plotly' heatmap |
| colRange | Return range for a column in a table |
| colUniqueValues | Return unique values for a column in a table |
| consortSet | Create draggable and order-able set of elements |
| consortUI | Connected Sort UI |
| contrastVServer | Shiny module server for creating comparison plots between... |
| contrastVUI | Shiny module contrast UI |
| cordataMake | Simple wrapper to make cordata |
| customDatasetInput | Shiny module UI for customized user-uploaded dataset |
| customDatasetServer | Shiny module server for customized user-uploaded dataset |
| customGroupSelect | Return a select input or slider range depending on group... |
| data2cor | Get correlation matrix and observations used |
| dataFusion | Fuse two datasets based on harmonized variable names |
| dataHelperServer | Shiny module server for simple traversal of relational tables... |
| dataHelperUI | Shiny app UI for simple traversal of relational tables in a... |
| dataSubsetInput | Shiny module UI for selecting a subsetted dataset |
| dataSubsetServer | Shiny server module for returning a subsetted dataset |
| dataUploadServer | Shiny server module function for user-uploaded data |
| dataUploadUI | Shiny module UI for user-uploaded data |
| defaultIndex | Default index maker |
| dev_mode | Get and set app dev mode |
| DIVE | DIVE: Data Integration and Visual Exploration |
| dualDrilldownServer | Server module server for data drilldown interaction |
| dualDrilldownUI | Shiny module UI for data drilldown interaction |
| excludePresent | Exclude values in dataset #2 that are present in dataset #1 |
| filter4j | Helper function for extracting inputs created with... |
| filterApply | Apply filter expressions to data |
| filterPanelServer | Filter server |
| filterPanelUI | Filter panel UI |
| filterQuo | Generate filter expression for filter inputs |
| fitDesign | Wrapper for creating design matrix and lmFit |
| geneVServer | Shiny module server for select-filter of genes or gene... |
| geneVUI | Shiny module UI for select-filter of genes or gene products |
| getFilterGroup | Apply filter values 'x' and return a defined group |
| getGEOInput | Shiny module UI for importing data from GEO |
| getGEOServer | Shiny module server for importing data from GEO |
| getLinkInput | Shiny module UI for retrieving internal data with action... |
| getLinkServer | Shiny module server for retrieving internal data with action... |
| hdlistchoicesMake | Make custom selection from final hdlist |
| hdlistMake | Wrapper to create hdlist (data object for multiV module) |
| infoOutput | Shiny module UI to display a modal on click |
| infoServer | Server module function to display a modal on click |
| limmaWrapper | Wrapper all limma steps |
| matchApp | Launch Shiny app for matching between two datasets |
| matchAppServer | Shiny app server for matching and exploration of two datasets |
| matchAppUI | Shiny app UI for matching application |
| matchLinkServer | Shiny server module for interactive drag-and-drop variable... |
| matchLinkUI | Shiny module UI for interactive drag-and-drop variable... |
| matchPair | Matching main function |
| matchPlotServer | Shiny module server for comparison histodot plots of... |
| matchPlotUI | Shiny module UI for comparison histodot plots of attributes... |
| matchResultOutput | Shiny module UI output for match results |
| matchResultServer | Shiny module server for generating match results output |
| matrixApp | Launch Shiny app for exploration of relationships in... |
| matrixApp2 | Launch Shiny app for exploration of relationships in... |
| matrixApp2Server | Shiny app server for interactive matrix (v2) |
| matrixApp2UI | Shiny app UI for interactive matrix (v2) |
| matrixAppServer | Shiny app server for exploration of relationships in... |
| matrixAppUI | Shiny app UI for exploration of relationships in annotated... |
| matrixAsNetworkServer | Server module server for network graph |
| matrixAsNetworkUI | Shiny module UI for network graph |
| matrixCtrl2Server | Shiny module server functions to control matrix view |
| matrixCtrl2UI | Shiny module UI for matrix view |
| matrixCtrlServer | Shiny module server functions to generate filter UI for... |
| matrixCtrlUI | Shiny module UI containing filter inputs for interactive... |
| matrixMainServer | Server module server for matrix with drilldown interaction |
| matrixMainUI | Shiny module UI for interactive matrix with drilldown... |
| meh | Modal Error Handling |
| multiVCtrlServer | Shiny module server for controlling multi-dataset views |
| multiVCtrlUI | Shiny module UI for controlling multi-dataset views |
| multiVServer | Shiny app server module for multi-views |
| multiVUI | Shiny app UI for multi-views |
| multiVUIR | Shiny app launcher for multi-view module |
| removeID | Exclude names referring to ID in vector |
| selectVServer | Shiny module server for selecting columns from a data table |
| selectVUI | Shiny module UI for selecting columns from a data table |
| sideFilterUI | Create a switchable filter input component |
| subsetHiVar | Subset a matrix by the most variable n features (columns) |
| validateRefData | Validate refdata object used in matchApp |
| xFoldChange | Compute fold change for x-axis |
| xVExprs | Helper to construct dataset object for use in 'xVServer'... |
| xVServer | Shiny module server for cross-view of multidimensional data |
| xVUI | Shiny module UI for cross-view of multidimensional data |
