awaardenberg/consensusDE: RNA-seq analysis using multiple algorithms

This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports "Voom", "EdgeR" and "DESeq", but can be easily extended. It uses RUV-seq (optional) to remove batch effects.

Getting started

Package details

AuthorAshley J. Waardenberg
Bioconductor views Clustering MultipleComparison Transcriptomics
MaintainerAshley J. Waardenberg <[email protected]>
LicenseGPL-3
Version0.99.10
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("awaardenberg/consensusDE")
awaardenberg/consensusDE documentation built on Oct. 24, 2018, 6:58 a.m.