API for bahlolab/cavalier
Assist With Variant Interpretation Phase Of Next Generation Sequencing Analysis Pipeline
| Global functions | |
|---|---|
| .onLoad | Source code |
| add_inheritance | Source code |
| add_slides | Source code |
| all_annotations | Source code |
| annotate_gaps | Source code |
| as_numeric_na_zero | Source code |
| build_caches | Man page Source code |
| build_disease_name_cache | Man page |
| build_panelapp_cache | Man page |
| cache | Man page Source code |
| cache_file | Man page Source code |
| caller_format_columns | Source code |
| caller_info_columns | Source code |
| cavalier | Man page |
| cavalier-package | Man page |
| clear_memory_caches | Man page Source code |
| create_igv_snapshots | Source code |
| create_slides | Source code |
| crop_pad_png | Source code |
| dbsnp_link | Source code |
| default_annotations | Source code |
| digest_df | Source code |
| endslash_dirname | Source code |
| ensembl2gevir | Man page Source code |
| ensembl2loeuf | Man page Source code |
| ensembl_gene_link | Source code |
| flex_table | Source code |
| flex_table_trans | Source code |
| genecards_link | Source code |
| get_cache_dirs | Source code |
| get_cavalier_opt | Source code |
| get_centromeres_gaps | Man page Source code |
| get_disease_name_cache | Man page |
| get_disease_names | Man page |
| get_g4e_full_list | Man page Source code |
| get_g4e_phenotype_list | Man page Source code |
| get_g4e_version | Man page Source code |
| get_gene_disease_map | Man page Source code |
| get_gene_list | Man page Source code |
| get_gene_list_versions | Source code |
| get_genes_to_phenotype | Man page Source code |
| get_gevir_table | Man page Source code |
| get_gevir_table_hgnc | Man page Source code |
| get_gtex_expression | Source code |
| get_gtex_expression_hgnc | Man page Source code |
| get_gtex_tissues | Source code |
| get_hgnc_alias | Man page Source code |
| get_hgnc_complete | Man page Source code |
| get_hgnc_ensembl | Man page Source code |
| get_hgnc_entrez | Man page Source code |
| get_hgnc_locus_group | Man page Source code |
| get_hgnc_locus_group_list | Man page Source code |
| get_hgnc_symbol | Man page Source code |
| get_hgnc_version | Man page Source code |
| get_hpo_g2p_p2g | Man page Source code |
| get_hpo_gene_list | Man page Source code |
| get_hpo_term_names | Man page Source code |
| get_hpo_version | Man page Source code |
| get_igv_genome | Source code |
| get_latest_cached_version | Source code |
| get_panelapp_panel | Man page Source code |
| get_panelapp_panel_version | Man page Source code |
| get_panelapp_panels | Man page Source code |
| get_panelapp_url | Man page Source code |
| get_panelapp_version_history | Man page |
| get_phenotype_to_genes | Man page Source code |
| get_slide_template | Source code |
| get_vcf_fixed | Source code |
| get_vcf_info | Source code |
| get_vep_ann | Source code |
| get_version | Man page Source code |
| gnomad_link | Source code |
| grantham_score | Source code |
| hgnc_ensembl2entrez | Man page Source code |
| hgnc_ensembl2id | Man page Source code |
| hgnc_ensembl2sym | Man page Source code |
| hgnc_entrez2ensembl | Man page Source code |
| hgnc_entrez2id | Man page Source code |
| hgnc_entrez2sym | Man page Source code |
| hgnc_id2ensembl | Man page Source code |
| hgnc_id2entrez | Man page Source code |
| hgnc_id2sym | Man page Source code |
| hgnc_sym2ensembl | Man page Source code |
| hgnc_sym2entrez | Man page Source code |
| hgnc_sym2id | Man page Source code |
| hgnc_sym2sym | Source code |
| hpo_api_get | Man page Source code |
| hpo_api_get_disease_names | Man page Source code |
| hpo_api_get_diseases_by_gene | Man page Source code |
| hpo_id2name | Man page Source code |
| hpo_mendelian_inheritnace | Man page |
| is_gds | Source code |
| is_number | Source code |
| is_valid_annotater | Source code |
| is_valid_caller | Source code |
| layout_multiple | Source code |
| layout_single | Source code |
| load_vcf | Source code |
| newline_every_n_chars | Source code |
| pad_x | Source code |
| pad_y | Source code |
| plot_gtex_compact | Source code |
| plot_gtex_expression | Man page Source code |
| plot_igv_snapshots | Source code |
| read_ped | Source code |
| read_png | Source code |
| remove_child_dirs | Source code |
| set_cavalier_opt | Source code |
| set_options_from_json | Source code |
| slide_layout | Source code |
| sym2gevir | Man page Source code |
| sym2loeuf | Man page Source code |
| vcf_to_gds | Source code |
