get_gene_list: Return a gene list from PanelApp, HPO or Genes4Epilepsy
In bahlolab/cavalier: Assist With Variant Interpretation Phase Of Next Generation Sequencing Analysis Pipeline
get_gene_list R Documentation
Return a gene list from PanelApp, HPO or Genes4Epilepsy
Description
Return data frame with columns list_id, list_name, list_version, symbol, hgnc_id, ensembl_gene_id, entrez_id, inheritance
NB confidence_level only used for PanelApp.
Usage
get_gene_list(id, version = NULL, save = NULL, min_confidence = 2L)
Examples
# Get PanelApp Australia Panel 202 (Genetic Epilespsy)
get_gene_list('PAA:202', version = '1.26')
# Get HPO genes associated with HP:0001250 (Seizure)
get_gene_list('HP:0001250')
#' Get all Genes4Epilepsy genes
get_gene_list('G4E:ALL')
# Get Genes4Epilepsy genes associated Malformations of Cortical Development
get_gene_list('G4E:MCD')
Get all protein coding genes from HGNC
get_gene_list('HGNC:protein-coding')
bahlolab/cavalier documentation built on April 5, 2025, 11:33 p.m.
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| get_gene_list | R Documentation |
Return a gene list from PanelApp, HPO or Genes4Epilepsy
Description
Return data frame with columns list_id, list_name, list_version, symbol, hgnc_id, ensembl_gene_id, entrez_id, inheritance NB confidence_level only used for PanelApp.
Usage
get_gene_list(id, version = NULL, save = NULL, min_confidence = 2L)
Examples
# Get PanelApp Australia Panel 202 (Genetic Epilespsy)
get_gene_list('PAA:202', version = '1.26')
# Get HPO genes associated with HP:0001250 (Seizure)
get_gene_list('HP:0001250')
#' Get all Genes4Epilepsy genes
get_gene_list('G4E:ALL')
# Get Genes4Epilepsy genes associated Malformations of Cortical Development
get_gene_list('G4E:MCD')
Get all protein coding genes from HGNC
get_gene_list('HGNC:protein-coding')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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