tests/testthat/_snaps/process.md

In bailey-lab/coiaf: Complexity of Infection Estimation with Allele Frequencies

cut midpoints work for a large data set (#18)

Code
  compute_coi(tibble::as_tibble(data), "real", seq_error = data$seq_error,
  bin_size = data$bin_size, coi_method = data$coi_method, use_bins = TRUE)
Condition
  Warning:
  The `use_bins` argument of `compute_coi()` is deprecated as of coiaf 0.2.0.
  i The ability to use bins to estimate the COI will be dropped in the next release.
Output
  $coi
  [1] 1

  $probability
   [1] 0.7589392288 0.0970897028 0.0434247877 0.0246155376 0.0159032233
   [6] 0.0111576164 0.0082839487 0.0064095253 0.0051176318 0.0041885658
  [11] 0.0034974474 0.0029689706 0.0025555018 0.0022256993 0.0019582463
  [16] 0.0017382291 0.0015549565 0.0014005993 0.0012693162 0.0011566764
  [21] 0.0010592684 0.0009744307 0.0009000617 0.0008344838 0.0007763443

bailey-lab/coiaf documentation built on April 26, 2023, 6:32 p.m.