API for bailey-lab/miplicorn
A Framework for Molecular Inversion Probe and Amplicon Analysis
| Global functions | |
|---|---|
| %>% | Man page |
| .data | Man page |
| .onLoad | Source code |
| := | Man page |
| `$<-.alt_tbl` | Source code |
| `$<-.cov_tbl` | Source code |
| `$<-.geno_tbl` | Source code |
| `$<-.hap_tbl` | Source code |
| `$<-.mut_freq` | Source code |
| `$<-.mut_prev` | Source code |
| `$<-.ref_alt_cov_tbl` | Source code |
| `$<-.ref_tbl` | Source code |
| `[.alt_tbl` | Source code |
| `[.cov_tbl` | Source code |
| `[.geno_tbl` | Source code |
| `[.hap_tbl` | Source code |
| `[.mut_freq` | Source code |
| `[.mut_prev` | Source code |
| `[.ref_alt_cov_tbl` | Source code |
| `[.ref_tbl` | Source code |
| `names<-.alt_tbl` | Source code |
| `names<-.cov_tbl` | Source code |
| `names<-.geno_tbl` | Source code |
| `names<-.hap_tbl` | Source code |
| `names<-.mut_freq` | Source code |
| `names<-.mut_prev` | Source code |
| `names<-.ref_alt_cov_tbl` | Source code |
| `names<-.ref_tbl` | Source code |
| alt_tbl_reconstruct | Source code |
| alt_tbl_reconstructable | Source code |
| arrange_natural | Man page Source code |
| as_label | Man page |
| as_name | Man page |
| autoplot.mut_freq | Man page Source code |
| autoplot.mut_prev | Man page Source code |
| check_named | Source code |
| chromosome-map | Man page |
| chromosome_map | Man page Source code |
| convert | Man page |
| convert_single | Man page Source code |
| convert_three | Man page Source code |
| cov_tbl_reconstruct | Source code |
| cov_tbl_reconstructable | Source code |
| default_theme | Source code |
| deprec_read_file | Source code |
| empty_file | Source code |
| enquo | Man page |
| enquos | Man page |
| example | Man page |
| expr | Man page |
| filter | Man page |
| filter_aa_change | Man page |
| filter_alt_umi_count | Man page |
| filter_coverage | Man page |
| filter_fn_factory | Man page Source code |
| filter_gene | Man page |
| filter_mutation_name | Man page |
| filter_ref_umi_count | Man page |
| filter_targeted | Man page |
| filter_tbl | Source code |
| geno_tbl_reconstruct | Source code |
| geno_tbl_reconstructable | Source code |
| genome_Pf3D7 | Man page |
| hap_tbl_reconstruct | Source code |
| hap_tbl_reconstructable | Source code |
| has_alt_tbl_cols | Source code |
| has_alt_tbl_coltypes | Source code |
| has_cov_tbl_cols | Source code |
| has_cov_tbl_coltypes | Source code |
| has_geno_tbl_cols | Source code |
| has_geno_tbl_coltypes | Source code |
| has_genotype_vals | Source code |
| has_hap_tbl_cols | Source code |
| has_hap_tbl_coltypes | Source code |
| has_mut_freq_cols | Source code |
| has_mut_freq_coltypes | Source code |
| has_mut_prev_cols | Source code |
| has_mut_prev_coltypes | Source code |
| has_ref_alt_cov_tbl_cols | Source code |
| has_ref_alt_cov_tbl_coltypes | Source code |
| has_ref_tbl_cols | Source code |
| has_ref_tbl_coltypes | Source code |
| label_mutations | Man page Source code |
| label_mutations.default | Source code |
| label_mutations.ref_alt_cov_tbl | Man page Source code |
| miplicorn | Man page |
| miplicorn-package | Man page |
| miplicorn_example | Man page Source code |
| mut_freq_reconstruct | Source code |
| mut_freq_reconstructable | Source code |
| mut_prev_reconstruct | Source code |
| mut_prev_reconstructable | Source code |
| mutation_frequency | Man page Source code |
| mutation_frequency.default | Source code |
| mutation_frequency.ref_alt_cov_tbl | Man page Source code |
| mutation_prevalence | Man page Source code |
| mutation_prevalence.default | Source code |
| mutation_prevalence.geno_tbl | Man page Source code |
| mutation_prevalence.ref_alt_cov_tbl | Man page Source code |
| new_alt_tbl | Source code |
| new_cov_tbl | Source code |
| new_geno_tbl | Source code |
| new_hap_tbl | Source code |
| new_mut_freq | Source code |
| new_mut_prev | Source code |
| new_ref_alt_cov_tbl | Source code |
| new_ref_tbl | Source code |
| plot.mut_freq | Man page Source code |
| plot.mut_prev | Man page Source code |
| plot_chromoMap | Man page Source code |
| plot_coverage | Man page Source code |
| plot_coverage.cov_tbl | Man page |
| plot_coverage.default | Source code |
| plot_coverage.ref_alt_cov_tbl | Man page |
| plot_coverage_fn | Source code |
| plot_karyoploteR | Man page Source code |
| plot_mutation_frequency | Man page Source code |
| plot_mutation_prevalence | Man page Source code |
| quiet | Source code |
| rainbow_theme | Source code |
| read | Man page Source code |
| read-deprecated | Man page |
| read-tbl | Man page |
| read_file | Man page Source code |
| read_tbl | Man page |
| read_tbl_alternate | Man page Source code |
| read_tbl_coverage | Man page Source code |
| read_tbl_genotype | Man page Source code |
| read_tbl_haplotype | Man page Source code |
| read_tbl_helper | Source code |
| read_tbl_ref_alt_cov | Man page Source code |
| read_tbl_reference | Man page Source code |
| ref_alt_cov_tbl_reconstruct | Source code |
| ref_alt_cov_tbl_reconstructable | Source code |
| ref_tbl_reconstruct | Source code |
| ref_tbl_reconstructable | Source code |
| tbl_sum.alt_tbl | Source code |
| tbl_sum.cov_tbl | Source code |
| tbl_sum.geno_tbl | Source code |
| tbl_sum.hap_tbl | Source code |
| tbl_sum.ref_alt_cov_tbl | Source code |
| tbl_sum.ref_tbl | Source code |
| theme_miplicorn | Man page Source code |
| theme_rainbow | Man page Source code |
| tidyeval | Man page |
