tests/testthat/_snaps/chromosome-map-deprecated.md

In bailey-lab/miplicorn: A Framework for Molecular Inversion Probe and Amplicon Analysis

error if wrong mapping package specified

Code
  chromosome_map(genome_Pf3D7, probes)
Condition
  Error in `chromosome_map()`:
  ! `map_pkg` must be of length 1.
  i `map_pkg` must be either "chromoMap" or "karyoploteR".

Code
  chromosome_map(genome_Pf3D7, probes, "ggplot2")
Condition
  Error in `chromosome_map()`:
  ! `map_pkg` must be either "chromoMap" or "karyoploteR".
  x You've input "ggplot2".

chromosome_map is deprecated

Code
  chromosome_map(genome_Pf3D7[, -1], probes, "karyoploteR")
Condition
  Warning:
  `chromosome_map()` was deprecated in miplicorn 0.2.0.
  i The function has been deprecated in favor of `plot_chromoMap()` and `plot_karyoploteR()`.
  Error in `chromosome_map()`:
  ! Genomic information is misformatted.

Code
  chromosome_map(genome_Pf3D7[, -1], probes, "chromoMap")
Condition
  Warning:
  `chromosome_map()` was deprecated in miplicorn 0.2.0.
  i The function has been deprecated in favor of `plot_chromoMap()` and `plot_karyoploteR()`.
  Error in `chromosome_map()`:
  ! Genomic information is misformatted.

bailey-lab/miplicorn documentation built on March 19, 2023, 7:40 p.m.