tests/testthat/_snaps/read-tbl-classes.md

In bailey-lab/miplicorn: A Framework for Molecular Inversion Probe and Amplicon Analysis

tbl_sum methods work

Code
  print(ref)
Output
  # A reference table: 2 x 2
    sample  ref_umi_count
    <chr>           <dbl>
  1 sample1            11
  2 sample2           100

Code
  print(alt)
Output
  # An alternate table: 2 x 2
    sample  alt_umi_count
    <chr>           <dbl>
  1 sample1            11
  2 sample2           100

Code
  print(cov)
Output
  # A coverage table: 2 x 2
    sample  coverage
    <chr>      <dbl>
  1 sample1       11
  2 sample2      100

Code
  print(geno)
Output
  # A genotype table: 2 x 3
    sample  targeted genotype
    <chr>   <chr>       <dbl>
  1 sample1 No              1
  2 sample2 Yes             0

Code
  print(hap)
Output
  # A haplotype table: 2 x 3
    sample  haplotype_id haplotype_sequence
    <chr>   <chr>        <chr>             
  1 sample1 mip1         CATG              
  2 sample2 mip2         TTGG

Code
  print(ref_alt_cov)
Output
  # A ref alt cov table: 2 x 4
    sample  ref_umi_count alt_umi_count coverage
    <chr>           <dbl>         <dbl>    <dbl>
  1 sample1             5             1        6
  2 sample2             0             5        6

bailey-lab/miplicorn documentation built on March 19, 2023, 7:40 p.m.