tests/testthat/_snaps/read-tbl.md

In bailey-lab/miplicorn: A Framework for Molecular Inversion Probe and Amplicon Analysis

detects named inputs

Input `gene` is named.
i This usually means that you've used `=` instead of `==`.
i Did you mean `gene == "mdr1"`?

Input `gene` is named.
i This usually means that you've used `=` instead of `==`.
i Did you mean `gene == "g1"`?

Input `var` is named.
i This usually means that you've used `=` instead of `==`.
i Did you mean `var == "g1"`?

filter variable must exist

Problem while computing `..1 = var == 5`..
i Filter using the columns 'gene_id', 'gene', 'mutation', 'func', 'aa_chng', and 'target'.

error if filter variable doesn't exist is pluralized properly

Problem while computing `..1 = var == 5`..
i Filter using the column 'gene'.

Problem while computing `..1 = var == 5`..
i Filter using the columns 'gene' and 'target'.

chrom and gene are deprecated

The `chrom` argument of `read()` is deprecated as of miplicorn 0.1.0.
Please use the `...` argument instead to filter data.

The `gene` argument of `read()` is deprecated as of miplicorn 0.1.0.
Please use the `...` argument instead to filter data.

Code
  read_tbl_ref_alt_cov(.tbl_ref = "small.csv", .tbl_alt = "small.csv", .tbl_cov = "small.csv",
    chrom = "13", gene = "atp")
Condition
  Warning:
  The `chrom` argument of `read()` is deprecated as of miplicorn 0.1.0.
  Please use the `...` argument instead to filter data.
  Warning:
  The `gene` argument of `read()` is deprecated as of miplicorn 0.1.0.
  Please use the `...` argument instead to filter data.
  Error in `read_tbl_ref_alt_cov()`:
  ! Multiple filtering criteria selected.
  x Cannot filter on both `chrom` and `gene`.
  i Select only one piece of information to filter on.

read_tbl_ref_alt_cov returns error if a file is empty

Unable to read files.
x "empty-file" is an empty file.

Unable to read files.
x "empty-file" is an empty file.

bailey-lab/miplicorn documentation built on March 19, 2023, 7:40 p.m.