plotCoefficients: plot coefficients

In baj12/crtRNAtools: Toolbox for RNAseq and scRNAseq projects

Description

plot coefficients of a gene given a DESeqDataSet (DESeq2 > v1.16)

Usage

plotCoefficients(dds, geneName, legend = TRUE)

Arguments

dds	DESeq2 object (DESeqDataSet)
geneName	name of the gene to be plotted, needs to be in the rownames of dds
legend	(TRUE/FALSE, default TRUE), whether or not to plot the legend inside the plot. the position is chosen automatically based on the last coefficient to be plotted.

Author(s)

Bernd Jagla, Institut Pasteur, Paris, France

Examples

library(DESeq2)
dds <-  dds <- makeExampleDESeqDataSet()
dds = DESeq(dds)
plotCoefficients(dds, "gene930")

baj12/crtRNAtools documentation built on May 14, 2019, 2 a.m.