Man pages for baj12/idealImmunoTP
Interactive Differential Expression AnaLysis
| deseqresult2DEgenes | Generate a tidy table with the DE genes from the results of... |
| deseqresult2tbl | Generate a tidy table with the results of DESeq |
| ggplotCounts | Plot normalized counts for a gene |
| goseqTable | Extract functional terms enriched in the DE genes, based on... |
| idealImmunoTP | idealImmunoTP: Interactive Differential Expression Analysis |
| ideal-pkg | ideal: Interactive Differential Expression Analysis |
| plotCoefficients | plot coefficients of a gene given a DESeqDataSet (DESeq2 >... |
| plot_ma | MA-plot from base means and log fold changes |
| plot_volcano | Volcano plot for log fold changes and log p-values |
| read_gmt | Read in a GMT file |
| sepguesser | Make an educated guess on the separator character |
| sig_heatmap | Plot a heatmap of the gene signature on the data |
| wrapup_for_iSEE | wrapup_for_iSEE |
