barakbri/dacomp: Non parametric differential abundance testing for microbiome counts data.

Normalization and differential abundance testing for microbiome counts data. Based on the method of Brill, Amir and Heller (2019). The package consists of two main functions: one function for selection of reference taxa for normalization, and a second function for normalizing counts according to the taxa selected and testing for differential abundance. The DS-FDR method for multiplicity correction (Jiang et al. 2017) is implemented as a part of the multiple testing procedure.

Getting started

Package details

AuthorBarak Brill, Amnon Amir, Ruth Heller
MaintainerBarak Brill <[email protected]>
LicenseLGPL2
Version1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("barakbri/dacomp")
barakbri/dacomp documentation built on Aug. 11, 2019, 4:21 p.m.