Various Useful Helper Functions

getDataWithCovarianceMatrix | Generates data with covariance structure specified by the... |

getFactorFromP1rds | Get the colors of a pagoda1 serialised app object as a factor |

ll2a | Convert list of lists of numbers to array |

load.image.fast | Loads an image generated with save.image.fast() |

make.doublets.two.groups.add | Makes an array with artificial doublets by adding cells... |

make.doublets.two.groups.subsample | Makes an array with artificial doublets by subsampling of... |

mergeMatrices | Merge expression matrices in a list, keeping only common... |

minStringDistance | Find minimum string distance strings in a vector |

mixVectorsOnLogical | Generates a new vector from two vectors by combining them... |

randomPositiveDefiniteMatrix | Generates a random positive definite matrix |

read10xMatrix | Read 10x matrix |

readInDropMatrix | Reads in a data matrix from the in house indrop pipeline |

readKleinMatrix | Reads in an expression matrix as formatted by the Klein lab... |

readMultiple10Xmatrices | wrapper with old name for read10xmatrices |

readMultiple10XmatricesAsList | read multiple 10x matrices and return as a list |

readMultipleInDropMatrices | Reads in multiple indrop matrices |

readMultipleKleinMatrices | Reads in multiple klein matrices and returns them in a list |

save.image.fast | save a R session image fast |

tableCorners | get NW, NE, SW and SE corners of a dataframe or matrix |

writeListOfDFs | Write a list of data.frames as individual csv files |

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