Man pages for barkasn/nbHelpers
Various Useful Helper Functions

deseqRes2TibbleConvert DESeq2 results table into a tibble
factor2CharConvert a factor to a character vector, while preserving the...
factorBreakdownBreak down a factor returning the names of the elements in...
factorBreakdown.2Break down a factor returning the names of the elements in...
getDataWithCovarianceMatrixGenerates data with covariance structure specified by the...
getDisplayGet the display paramters for X11 plotting
getFactorFromP1rdsGet the colors of a pagoda1 serialised app object as a factor
getNamedDirectoryListingLike list.files but return the full path and the vector...
getParMfrowget number of rows and cols to use when printing a n.items...
getSlurmCpusGet the number of processors allocated to the current job by...
headtailHead and tail of a table combined
is.errorReturn TRUE if the parameter is an error object
ll2aConvert list of lists of numbers to array
load.hca.matrixLoad a sparse matrix from an HDF5 file ensuring that the...
mergeFactorMerge a previously broken down factor
mergeMatricesMerge expression matrices in a list, keeping only common...
minStringDistanceFind minimum string distance strings in a vector
mixCellsInMatrixmix cells in a matrix with a common background profile...
mixVectorsOnLogicalGenerates a new vector from two vectors by combining them...
NA2FALSEConvert NA values in x to FALSE
NA2VALUEConvert NA values in x to the value specified by val
namedLevelsGet a vector with the levels of a factor named with their own...
namedNamesGet a vector of the names of an object named by the names...
plapplyParallel apply using the packages parallel, BiocParallel or...
plotFactorsPercentGenerate a ggplot2 plot comparing two factors for a common...
randomPositiveDefiniteMatrixGenerates a random positive definite matrix
read10xmatricesread multiple 10x matrices into a single sparse array
read10xMatrixRead 10x matrix
readInDropMatrixReads in a data matrix from the in house indrop pipeline
readKleinMatrixReads in an expression matrix as formatted by the Klein lab...
readMultiple10Xmatriceswrapper with old name for read10xmatrices
readMultiple10XmatricesAsListread multiple 10x matrices and return as a list
readMultipleInDropMatricesReads in multiple indrop matrices
readMultipleKleinMatricesReads in multiple klein matrices and returns them in a list
removeLevelsBySizeRemove levels and elements from a factor that have fewer than...
removeLevelsFromFactorRemove all elements from specificed clusters from a factor...
replaceClusterFactorsCombine two named factors when the new factor contains a...
rldpkgReload a package from the library
setDisplaySet the display parameter for X11 plotting
str1Get the top level structure of an object
str2Get the two top levels of structure of an object
strpartGet the specified substring of string delimited by a...
subSampleCountMatrixSubsample a count matrix to a specific number of reads
subSampleCountMatrix2Subsample a count matrix to a specific number of reads,...
symmsetdiffGet the symmetrical set difference between two sets (XOR)
tableCornersget NW, NE, SW and SE corners of a dataframe or matrix
uniqCombsGet all unique combinations of elements in a list
vectorSeqOverlapGet the number of commong elements among the top n elements...
writeListOfDFsWrite a list of data.frames as individual csv files
barkasn/nbHelpers documentation built on Sept. 10, 2018, 9:05 a.m.