Man pages for barryrowlingson/PrevMap
Geostatistical Modelling of Spatially Referenced Prevalence Data
| adjust.sigma2 | Adjustment factor for the variance of the convolution of... |
| autocor.plot | Plot of the autocorrelgram for posterior samples |
| binomial.logistic.Bayes | Bayesian estimation for the binomial logistic model |
| binomial.logistic.MCML | Monte Carlo Maximum Likelihood estimation for the binomial... |
| coef.PrevMap | Extract model coefficients |
| continuous.sample | Spatially continuous sampling |
| contour.pred.PrevMap | Contour plot of a predicted surface |
| control.mcmc.Bayes | Control settings for the MCMC algorithm used for Bayesian... |
| control.mcmc.MCML | Control settings for the MCMC algorithm used for classical... |
| control.prior | Priors specification |
| control.profile | Auxliary function for controlling profile log-likelihood in... |
| create.ID.coords | ID spatial coordinates |
| data_sim | Simulated binomial data-set over the unit square |
| dens.plot | Density plot for posterior samples |
| discrete.sample | Spatially discrete sampling |
| Laplace.sampling | Langevin-Hastings MCMC for conditional simulation |
| Laplace.sampling.lr | Langevin-Hastings MCMC for conditional simulation (low-rank... |
| linear.model.Bayes | Bayesian estimation for the geostatistical linear Gaussian... |
| linear.model.MLE | Maximum Likelihood estimation for the geostatistical linear... |
| loaloa | Loa loa prevalence data from 197 village surveys |
| loglik.ci | Profile likelihood confidence intervals |
| loglik.linear.model | Profile log-likelihood or fixed parameters likelihood... |
| matern.kernel | Matern kernel |
| plot.pred.PrevMap | Plot of a predicted surface |
| plot.profile.PrevMap | Plot of the profile log-likelihood for the covariance... |
| plot.shape.matern | Plot of the profile likelihood for the shape parameter of the... |
| shape.matern | Profile likelihood for the shape parameter of the Matern... |
| spatial.pred.binomial.Bayes | Bayesian spatial predictions for the binomial logistic model |
| spatial.pred.binomial.MCML | Spatial predictions for the binomial logistic model using... |
| spatial.pred.linear.Bayes | Bayesian spatial predictions for the geostatistical Linear... |
| spatial.pred.linear.MLE | Spatial predictions for the geostatistical Linear Gaussian... |
| summary.Bayes.PrevMap | Summarizing Bayesian model fits |
| summary.PrevMap | Summarizing likelihood-based model fits |
| trace.plot | Trace-plots for posterior samples |
