BIGenrichr: Run EnrichR function on multiple Geneset databases on either...

In basilinb/SEARchways: One place for GSEA, enrichr and clusterprofiler

Run EnrichR function on multiple Geneset databases on either gene list or modules of intertest

Description

Run EnrichR function on multiple Geneset databases on either gene list or modules of intertest

Usage

BIGenrichr(
  gene_mod_list,
  type = "gene",
  gene_id = "HGNC",
  dbs = c("MSigDB_Hallmark_2020"),
  mod_of_interest = "all"
)

Arguments

gene_mod_list	Here input either Genelist in HGNC or Ensembl ID format or input module object output from module function
type	Type can be either gene or module
gene_id	gene id is either HGNC or Ensembl
dbs	Enter the geneset database you want to run Enrichr on the default is MSigDB Hallmark 2020 to check available database run enrichR::listEnrichrDb()
mod_of_interest	Input your modules of interest by default will run modules

Value

list with enrichr result for each geneset database

Author(s)

Basilin Benson

basilinb/SEARchways documentation built on March 29, 2022, 12:04 a.m.