scoreNeighbors: Calculate match score generic.

In bayesmendel/snipR: Pedigree deduplication

Description

scoreNeighbors returns a Scores object with the Neighbors slot populated with a match score for each potential duplicate found from the SNIP algorithm.

Usage

scoreNeighbors(object, method = "intersection")

## Default S3 method:
scoreNeighbors(object, method = "intersection")

## S3 method for class 'Blocks'
scoreNeighbors(object, method = "intersection")

## S3 method for class 'Scores'
scoreNeighbors(object, method = "intersection")

Arguments

object	object containing pre-computed Neighbors from the SNIP algorithm.
method	Character value. If intersection, then uses the count of times the match was found. If "greedy", then uses the greedy match score.

Value

An object of class Scores containing the scored neighbor pairs.

bayesmendel/snipR documentation built on Jan. 25, 2022, 12:33 a.m.