Man pages for bblonder/hypervolume
High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls
| acacia_pinus | Data for Acacia and Pinus tree distributions |
| circles | Circles simulated dataset |
| copy_param_hypervolume | Generate hypervolumes using pre-existing parameters |
| estimate_bandwidth | Kernel bandwidth estimators for hypervolumes |
| expectation_ball | Hypersphere expectation |
| expectation_box | Hyperbox expectation |
| expectation_convex | Convex expectation |
| expectation_maximal | Maximal expectation |
| find_optimal_occupancy_thin | Find optimal parameters to calculate occupancy |
| get_centroid | Get centroid of hypervolume or hypervolume list |
| get_centroid_weighted | Get weighted centroid of hypervolume or hypervolume list |
| get_occupancy_intersection_bootstrap | Volume of the intersection of a bootstrapped occupancy object |
| get_occupancy_stats | Stats from occupancy objects |
| get_occupancy_unshared_bootstrap | Volume of the unshared fraction of a bootstrapped occupancy... |
| get_occupancy_volume_bootstrap | Extract the volume from occupancy bootstrap objects |
| get_relative_volume | Extract the relative volume |
| get_volume | Extract volume |
| hypervolume | Hypervolume construction methods |
| hypervolume_box | Hypervolume construction via hyperbox kernel density... |
| Hypervolume-class | Class '"Hypervolume"' |
| hypervolume_distance | Distance between two hypervolumes |
| hypervolume_estimate_probability | Estimate probability a given location |
| hypervolume_funnel | Hypervolumes at different sample sizes |
| hypervolume_gaussian | Hypervolume construction via Gaussian kernel density... |
| hypervolume_general_model | Generates hypervolume by sampling from arbitrary model... |
| hypervolume_holes | Hole detection |
| hypervolume_inclusion_test | Inclusion test |
| hypervolume_join | Concatenate hypervolumes |
| HypervolumeList-class | Class '"HypervolumeList"' |
| hypervolume_n_occupancy | Operations for groups of hypervolumes |
| hypervolume_n_occupancy_permute | Hypervolumes through permuting labels of n pairwise groups of... |
| hypervolume_n_occupancy_test | Significance of random points occupancy |
| hypervolume_n_resample | Bootstrap n hypervolumes |
| hypervolume_overlap_confidence | Confidence intervals for overlap statistics |
| hypervolume_overlap_statistics | Overlap statistics for set operations (Sorensen, Jaccard,... |
| hypervolume_overlap_test | Null distribution for overlap statistics |
| hypervolume-package | High Dimensional Geometry, Set Operations, Projection, and... |
| hypervolume_permute | Hypervolumes through permuting data of two hypervolumes |
| hypervolume_project | Geographical projection of hypervolume for species... |
| hypervolume_prune | Removes small hypervolumes from a HypervolumeList |
| hypervolume_redundancy | Redundancy of a point in a hypervolume |
| hypervolume_resample | Hypervolume resampling methods |
| hypervolume_save_animated_gif | Saves animated GIF of three-dimensional hypervolume plot. |
| hypervolume_segment | Segments a hypervolume into multiple separate hypervolumes. |
| hypervolume_set | Set operations (intersection / union / unique components) |
| hypervolume_set_n_intersection | Multi-way set intersection |
| hypervolume_svm | Hypervolume construction via one-class support vector machine... |
| hypervolume_thin | Reduces the number of random points in a hypervolume |
| hypervolume_threshold | Thresholds hypervolume and calculates volume quantile... |
| hypervolume_to_data_frame | Convert hypervolumes to 'data.frame' |
| hypervolume_variable_importance | Hypervolume variable importance |
| morphSnodgrassHeller | Morphological data for Darwin's finches |
| occupancy_bootstrap_gof | Goodness of fit metrics for bootstrapped occupancy objects |
| occupancy_filter | Subset occupancy hypervolumes |
| occupancy_to_intersection | Get the intersection of an occupancy object |
| occupancy_to_union | Union of hypervolumes from an occupancy object |
| occupancy_to_unshared | Unshared fraction from an occupancy object |
| padded_range | Generates axis-wise range limits with padding |
| plot.Hypervolume | Plot a hypervolume or list of hypervolumes |
| print.Hypervolume | Print summary of hypervolume |
| quercus | Data and demo for Quercus (oak) tree distributions |
| summary.Hypervolume | Summary of hypervolume |
| to_hv_list | Read hypervolumes from directory |
| weight_data | Abundance weighting and prior of data for hypervolume input |
