Files in bbolker/glmmadmb
Generalized Linear Mixed Models using 'AD Model Builder'
.Rbuildignore
.gitignore
BinaryFiles
ChangeLog
DESCRIPTION
LICENSE
NAMESPACE
R/#utilities.R#
R/anova.glmm.admb.R
R/figure/html-template-auto-report1.png
R/figure/html-template-auto-report2.png
R/getbin.R
R/getdata.R
R/glmm.admb.R
R/logLik.glmm.admb.R
R/methods.R
R/par_read.R
R/phicalc.R
R/pin_write.R
R/plot.glmm.admb.R
R/predict.R
R/print.glmm.admb.R
R/rformula.R
R/summary.glmm.admb.R
R/utilities.R
README.md
TODO
TODO.md
TODO_2
data/Owls.rda
data/epil2.rda
doc
extensions.md
inst/CITATION
inst/NEWS.Rd
inst/admb_tests/bacteria.dat
inst/admb_tests/bacteria.par
inst/admb_tests/bacteria.pin
inst/admb_tests/bacteria.std
inst/admb_tests/betabinom.dat
inst/admb_tests/betabinom.par
inst/admb_tests/betabinom.pin
inst/admb_tests/betabinom.std
inst/admb_tests/epil2.dat
inst/admb_tests/epil2.par
inst/admb_tests/epil2.pin
inst/admb_tests/epil2.std
inst/admb_tests/hurdle_biochem1.dat
inst/admb_tests/hurdle_biochem1.par
inst/admb_tests/hurdle_biochem1.pin
inst/admb_tests/hurdle_biochem1.std
inst/admb_tests/hurdle_biochem2.dat
inst/admb_tests/hurdle_biochem2.par
inst/admb_tests/hurdle_biochem2.pin
inst/admb_tests/hurdle_biochem2.std
inst/admb_tests/zi_owls.dat
inst/admb_tests/zi_owls.par
inst/admb_tests/zi_owls.pin
inst/admb_tests/zi_owls.std
inst/bin/linux32/glmmadmb
inst/bin/linux64/glmmadmb
inst/bin/macos32/glmmadmb
inst/bin/macos64/glmmadmb
inst/bin/windows32/glmmadmb.exe
inst/bin/windows64/glmmadmb.exe
inst/doc/glmmADMB.pdf
inst/extdata/OwlModel.rda
inst/getlist.R
inst/glmmadmb.bib
inst/src/glibc_ver.c
inst/testdata/glmmadmb-tst-fits.rda
inst/testdata/glmmadmb-tst.fits.R
inst/testdata/multrand_batch.R
inst/testdata/multrand_batch.RData
inst/testdata/multrand_lme4_sum.RData
inst/testsx/Contraception.R
inst/testsx/Mmmec.R
inst/testsx/README
inst/testsx/multrand2.R
inst/tools/getbin.R
inst/tools/mk_ex.R
inst/tpl/Makefile
inst/tpl/bvprobit.tpl
inst/tpl/glmmadmb.cpp
inst/tpl/glmmadmb.htp
inst/tpl/glmmadmb.tpl
inst/tpl/glmmadmb_DF.tpl
inst/tpl/glmmadmb_DF2.tpl
inst/tpl/glmmadmb_DF_28May.tpl
inst/tpl/glmmadmb_DF_7may.tpl
inst/tpl/glmmadmb_old.tpl
inst/tpl/glmmadmb_x1.tpl
inst/tpl/nbmm.tpl
makesavefiles
man/Owls.Rd
man/admbControl.Rd
man/anova.glmm.admb.Rd
man/check_rforge.Rd
man/check_rforge.Rd~
man/epil2.Rd
man/get_bin_version.Rd
man/getdata.Rd
man/glmm.admb.Rd
man/glmmADMB-package.Rd
man/logLik.glmm.admb.Rd
man/mcmc.control.Rd
man/plot.glmm.admb.Rd
man/predict.glmmadmb.Rd
man/print.glmm.admb.Rd
man/ranef.glmm.admb.Rd
man/step.Rd
man/summary.glmm.admb.Rd
tests/testthat/test-methods.R
tests/testthat/test-predict.R
tests_skip/ADMButils.s
tests_skip/aiccomp.R
tests_skip/aiccomp.Rout.save
tests_skip/anova.R
tests_skip/anova.Rout.save
tests_skip/bacteria.R
tests_skip/bacteria.Rout.save
tests_skip/beta.R
tests_skip/beta.Rout.save
tests_skip/betabinom.R
tests_skip/betabinom.Rout.save
tests_skip/build/pip-delete-this-directory.txt
tests_skip/drop1.R
tests_skip/drop1.Rout.save
tests_skip/g3.RData
tests_skip/gamma.R
tests_skip/gamma.Rout.save
tests_skip/groupfactorcheck.R
tests_skip/groupfactorcheck.Rout.save
tests_skip/hurdle.R
tests_skip/hurdle.Rout.save
tests_skip/links.R
tests_skip/links.Rout.save
tests_skip/logistic.R
tests_skip/logistic.Rout.save
tests_skip/makesavefiles
tests_skip/mcmc.R
tests_skip/mcmc.Rout.save
tests_skip/method_masking.R
tests_skip/method_masking.Rout.save
tests_skip/methods.R
tests_skip/methods.Rout.save
tests_skip/mkdir.R
tests_skip/mkdir.Rout.save
tests_skip/multrand.R
tests_skip/multrand.Rout
tests_skip/multrand.Rout.save
tests_skip/multrand_batch.Rout
tests_skip/multrand_batch.Rout.save
tests_skip/nbinom.R
tests_skip/nbinom.Rout.save
tests_skip/norand.R
tests_skip/norand.Rout.save
tests_skip/owls.R
tests_skip/owls.R~
tests_skip/predoffset.R
tests_skip/predoffset.Rout.save
tests_skip/ranefdef.R
tests_skip/ranefdef.Rout.save
tests_skip/ransd.R
tests_skip/ransd.Rout.save
tests_skip/residuals.R
tests_skip/residuals.Rout.save
tests_skip/rformula.R
tests_skip/rformula.Rout.save
tests_skip/singlerand.R
tests_skip/singlerand.Rout.save
tests_skip/test.dat
tests_skip/tmpfile.txt
tests_skip/unstr_vcov.R
tests_skip/unstr_vcov.Rout.save
tests_skip/vc.R
tests_skip/vc.Rout.save
tests_skip/zeroinfl.R
tests_skip/zeroinfl.Rout.save
tests_skip/ziOwls.R
tests_skip/ziOwls.Rout.save
vignettes/Makefile
vignettes/Makefile~
vignettes/OwlModel.rda
vignettes/TODO
vignettes/auto/glmmADMB.el
vignettes/cache/__packages
vignettes/cache/glmmadmbcfit_eabb259670893e7ee4f182d904c2841d.RData
vignettes/cache/glmmadmbcfit_eabb259670893e7ee4f182d904c2841d.rdb
vignettes/cache/glmmadmbcfit_eabb259670893e7ee4f182d904c2841d.rdx
vignettes/cache/glmmadmbfit_c2976592ea89a44486bba214be777f09.RData
vignettes/cache/glmmadmbfit_c2976592ea89a44486bba214be777f09.rdb
vignettes/cache/glmmadmbfit_c2976592ea89a44486bba214be777f09.rdx
vignettes/cache/glmmadmbnbinom1fit_98012acfe87e9bbebd0b770a7361fb61.RData
vignettes/cache/glmmadmbnbinom1fit_98012acfe87e9bbebd0b770a7361fb61.rdb
vignettes/cache/glmmadmbnbinom1fit_98012acfe87e9bbebd0b770a7361fb61.rdx
vignettes/cache/glmmadmbnbinom1vfit_bb46d10ce5acdd5d6f67480d3bac6b8e.RData
vignettes/cache/glmmadmbnbinom1vfit_bb46d10ce5acdd5d6f67480d3bac6b8e.rdb
vignettes/cache/glmmadmbnbinom1vfit_bb46d10ce5acdd5d6f67480d3bac6b8e.rdx
vignettes/cache/glmmadmbnbinomfit_d49b9c4ab7198df92fe3ee72232e0748.RData
vignettes/cache/glmmadmbnbinomfit_d49b9c4ab7198df92fe3ee72232e0748.rdb
vignettes/cache/glmmadmbnbinomfit_d49b9c4ab7198df92fe3ee72232e0748.rdx
vignettes/cache/glmmadmbnbinomhfit_1fe1c2526e629023843f08ba34113922.RData
vignettes/cache/glmmadmbnbinomhfit_1fe1c2526e629023843f08ba34113922.rdb
vignettes/cache/glmmadmbnbinomhfit_1fe1c2526e629023843f08ba34113922.rdx
vignettes/cache/time1_c5dcbc4d1749ea0f4fc7a9130d31e2d0.RData
vignettes/cache/time1_c5dcbc4d1749ea0f4fc7a9130d31e2d0.rdb
vignettes/cache/time1_c5dcbc4d1749ea0f4fc7a9130d31e2d0.rdx
vignettes/figure/mcmcplot1-1.pdf
vignettes/figure/mcmcplot1.pdf
vignettes/figure/owlplot1-1.pdf
vignettes/figure/owlplot1.pdf
vignettes/figure/owlplot2-1.pdf
vignettes/figure/owlplot2.pdf
vignettes/glmmADMB.Knw
vignettes/glmmADMB.Rnw
vignettes/glmmADMB.lg
vignettes/glmmADMB.tmp
vignettes/glmmadmb.bib
vignettes/lineno.sty
vignettes/owl_mcmcbatch.R
vignettes/owls_mcmcbatch.R
vignettes/owls_mcmcbatch.RData
vignettes/owls_mcmcdir/admodel.cov
vignettes/owls_mcmcdir/admodel.dep
vignettes/owls_mcmcdir/admodel.hes
vignettes/owls_mcmcdir/b1
vignettes/owls_mcmcdir/b2
vignettes/owls_mcmcdir/eigv.rpt
vignettes/owls_mcmcdir/f1b2list1
vignettes/owls_mcmcdir/f1b2list12
vignettes/owls_mcmcdir/f1b2list13
vignettes/owls_mcmcdir/fmin.log
vignettes/owls_mcmcdir/glmmadmb.b01
vignettes/owls_mcmcdir/glmmadmb.b02
vignettes/owls_mcmcdir/glmmadmb.b03
vignettes/owls_mcmcdir/glmmadmb.bar
vignettes/owls_mcmcdir/glmmadmb.bgs
vignettes/owls_mcmcdir/glmmadmb.cor
vignettes/owls_mcmcdir/glmmadmb.dat
vignettes/owls_mcmcdir/glmmadmb.eva
vignettes/owls_mcmcdir/glmmadmb.log
vignettes/owls_mcmcdir/glmmadmb.luu
vignettes/owls_mcmcdir/glmmadmb.mc2
vignettes/owls_mcmcdir/glmmadmb.mcm
vignettes/owls_mcmcdir/glmmadmb.p01
vignettes/owls_mcmcdir/glmmadmb.p02
vignettes/owls_mcmcdir/glmmadmb.p03
vignettes/owls_mcmcdir/glmmadmb.par
vignettes/owls_mcmcdir/glmmadmb.pin
vignettes/owls_mcmcdir/glmmadmb.psv
vignettes/owls_mcmcdir/glmmadmb.r01
vignettes/owls_mcmcdir/glmmadmb.r02
vignettes/owls_mcmcdir/glmmadmb.r03
vignettes/owls_mcmcdir/glmmadmb.rep
vignettes/owls_mcmcdir/glmmadmb.rhes
vignettes/owls_mcmcdir/glmmadmb.shess
vignettes/owls_mcmcdir/glmmadmb.std
vignettes/owls_mcmcdir/hesscheck
vignettes/owls_mcmcdir/hessian.bin
vignettes/owls_mcmcdir/nf1b2list1
vignettes/owls_mcmcdir/nf1b2list12
vignettes/owls_mcmcdir/nf1b2list13
vignettes/owls_mcmcdir/s1
vignettes/owls_mcmcdir/s2
vignettes/owls_mcmcdir/sims
vignettes/owls_mcmcdir/variance
vignettes/owls_mcmcdir0/admodel.cov
vignettes/owls_mcmcdir0/admodel.dep
vignettes/owls_mcmcdir0/admodel.hes
vignettes/owls_mcmcdir0/b1
vignettes/owls_mcmcdir0/b2
vignettes/owls_mcmcdir0/eigv.rpt
vignettes/owls_mcmcdir0/fmin.log
vignettes/owls_mcmcdir0/glmmadmb.b01
vignettes/owls_mcmcdir0/glmmadmb.b02
vignettes/owls_mcmcdir0/glmmadmb.b03
vignettes/owls_mcmcdir0/glmmadmb.bar
vignettes/owls_mcmcdir0/glmmadmb.bgs
vignettes/owls_mcmcdir0/glmmadmb.cor
vignettes/owls_mcmcdir0/glmmadmb.dat
vignettes/owls_mcmcdir0/glmmadmb.ecm
vignettes/owls_mcmcdir0/glmmadmb.eva
vignettes/owls_mcmcdir0/glmmadmb.hst
vignettes/owls_mcmcdir0/glmmadmb.log
vignettes/owls_mcmcdir0/glmmadmb.luu
vignettes/owls_mcmcdir0/glmmadmb.mc2
vignettes/owls_mcmcdir0/glmmadmb.mcm
vignettes/owls_mcmcdir0/glmmadmb.p01
vignettes/owls_mcmcdir0/glmmadmb.p02
vignettes/owls_mcmcdir0/glmmadmb.p03
vignettes/owls_mcmcdir0/glmmadmb.par
vignettes/owls_mcmcdir0/glmmadmb.pin
vignettes/owls_mcmcdir0/glmmadmb.psv
vignettes/owls_mcmcdir0/glmmadmb.r01
vignettes/owls_mcmcdir0/glmmadmb.r02
vignettes/owls_mcmcdir0/glmmadmb.r03
vignettes/owls_mcmcdir0/glmmadmb.rep
vignettes/owls_mcmcdir0/glmmadmb.rhes
vignettes/owls_mcmcdir0/glmmadmb.shess
vignettes/owls_mcmcdir0/glmmadmb.std
vignettes/owls_mcmcdir0/hesscheck
vignettes/owls_mcmcdir0/hessian.bin
vignettes/owls_mcmcdir0/s1
vignettes/owls_mcmcdir0/s2
vignettes/owls_mcmcdir0/sims
vignettes/owls_mcmcdir0/variance
